miRNA display CGI


Results 61 - 80 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24012 3' -55.4 NC_005262.1 + 50041 0.67 0.708527
Target:  5'- aGC-CGGCGCCGGCUgcucccgagacgaagCCGGaGACg -3'
miRNA:   3'- gCGcGCUGCGGCUGAaaa------------GGCCgUUG- -5'
24012 3' -55.4 NC_005262.1 + 51171 0.67 0.715926
Target:  5'- gCGCGCagcaGGCaGCCGACgacg-CGGCGGCc -3'
miRNA:   3'- -GCGCG----CUG-CGGCUGaaaagGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 42269 0.67 0.673224
Target:  5'- uGCgGCGACGagCGGCacgggcaCCGGCGACg -3'
miRNA:   3'- gCG-CGCUGCg-GCUGaaaa---GGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 41664 0.67 0.673224
Target:  5'- cCG-GCGGCGCCGucauCgccgCCGGCAccgGCa -3'
miRNA:   3'- -GCgCGCUGCGGCu---GaaaaGGCCGU---UG- -5'
24012 3' -55.4 NC_005262.1 + 43783 0.67 0.715926
Target:  5'- aGCGCGuCGCCGcGCgaaUUCGGCccGGCu -3'
miRNA:   3'- gCGCGCuGCGGC-UGaaaAGGCCG--UUG- -5'
24012 3' -55.4 NC_005262.1 + 4221 0.67 0.705344
Target:  5'- -aCGCGGCGCCGuuUUUUuaugcCCGGCuuucGCg -3'
miRNA:   3'- gcGCGCUGCGGCugAAAA-----GGCCGu---UG- -5'
24012 3' -55.4 NC_005262.1 + 17495 0.67 0.705344
Target:  5'- aGCGUGGCGCCcaGCg--UCuCGGCAu- -3'
miRNA:   3'- gCGCGCUGCGGc-UGaaaAG-GCCGUug -5'
24012 3' -55.4 NC_005262.1 + 45854 0.67 0.705344
Target:  5'- uCGcCGCGAUGCCGAUcggcgucgcgUUCgCGGgAACg -3'
miRNA:   3'- -GC-GCGCUGCGGCUGaa--------AAG-GCCgUUG- -5'
24012 3' -55.4 NC_005262.1 + 32867 0.67 0.704282
Target:  5'- gGCGCGcCGCCGgugucgaGCUUgu-CGGCGAUc -3'
miRNA:   3'- gCGCGCuGCGGC-------UGAAaagGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 8289 0.67 0.694693
Target:  5'- cCGCGCGGaucauCGCugCGGCgccUUCCGGCGu- -3'
miRNA:   3'- -GCGCGCU-----GCG--GCUGaa-AAGGCCGUug -5'
24012 3' -55.4 NC_005262.1 + 7719 0.67 0.694693
Target:  5'- cCGC-CGGCGUCGACa--UUCGGcCAACg -3'
miRNA:   3'- -GCGcGCUGCGGCUGaaaAGGCC-GUUG- -5'
24012 3' -55.4 NC_005262.1 + 11488 0.67 0.694693
Target:  5'- gGCGCGGCG-CGGCU---UCGGCGu- -3'
miRNA:   3'- gCGCGCUGCgGCUGAaaaGGCCGUug -5'
24012 3' -55.4 NC_005262.1 + 37877 0.67 0.692555
Target:  5'- -uCGCGACGUCGGuaucguaaaUCUGGCAGCg -3'
miRNA:   3'- gcGCGCUGCGGCUgaaa-----AGGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 34565 0.67 0.683982
Target:  5'- cCGCGCGgaugugcucgaACGCCGuaggcUCCgGGCAGCc -3'
miRNA:   3'- -GCGCGC-----------UGCGGCugaaaAGG-CCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 54405 0.67 0.683982
Target:  5'- aGCGCGuCGauGACg--UCCuGGCGGCu -3'
miRNA:   3'- gCGCGCuGCggCUGaaaAGG-CCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 23399 0.67 0.673224
Target:  5'- uGCGCGGCGCCuugaugcGCUUga-UGGCGAa -3'
miRNA:   3'- gCGCGCUGCGGc------UGAAaagGCCGUUg -5'
24012 3' -55.4 NC_005262.1 + 58954 0.67 0.672146
Target:  5'- gCGCGCagcagucGAaccaGCCGGCcg--CCGGCGGCc -3'
miRNA:   3'- -GCGCG-------CUg---CGGCUGaaaaGGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 22422 0.67 0.673224
Target:  5'- aGCGC--CGCCuGCUcg-CCGGCAACc -3'
miRNA:   3'- gCGCGcuGCGGcUGAaaaGGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 4558 0.67 0.673224
Target:  5'- gCGCGCGGCGCaucucGCgccagCGGCGGCg -3'
miRNA:   3'- -GCGCGCUGCGgc---UGaaaagGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 46920 0.67 0.715926
Target:  5'- aCGC-CGGCGC--GCUUUUCuCGGCGAg -3'
miRNA:   3'- -GCGcGCUGCGgcUGAAAAG-GCCGUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.