Results 41 - 60 of 206 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24012 | 3' | -55.4 | NC_005262.1 | + | 49348 | 0.71 | 0.442664 |
Target: 5'- gCGCGCGccgcgcuCGCUGACgac-UCGGCGACg -3' miRNA: 3'- -GCGCGCu------GCGGCUGaaaaGGCCGUUG- -5' |
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24012 | 3' | -55.4 | NC_005262.1 | + | 55646 | 0.71 | 0.482001 |
Target: 5'- gCGCGCucGugGCCG-Cg--UCCGGCAc- -3' miRNA: 3'- -GCGCG--CugCGGCuGaaaAGGCCGUug -5' |
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24012 | 3' | -55.4 | NC_005262.1 | + | 32922 | 0.71 | 0.459167 |
Target: 5'- aCGCGCGACGCucccagcgccuucaCGAUcgcuccgaCCGGCAACc -3' miRNA: 3'- -GCGCGCUGCG--------------GCUGaaaa----GGCCGUUG- -5' |
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24012 | 3' | -55.4 | NC_005262.1 | + | 53571 | 0.71 | 0.462112 |
Target: 5'- gGCGCGcacGCGCUGA-----CCGGCAGCa -3' miRNA: 3'- gCGCGC---UGCGGCUgaaaaGGCCGUUG- -5' |
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24012 | 3' | -55.4 | NC_005262.1 | + | 12524 | 0.71 | 0.462112 |
Target: 5'- cCGCGCGACGCgauCGcCUccaugUUgCGGCGGCa -3' miRNA: 3'- -GCGCGCUGCG---GCuGAa----AAgGCCGUUG- -5' |
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24012 | 3' | -55.4 | NC_005262.1 | + | 43951 | 0.71 | 0.482001 |
Target: 5'- gCGCGCGaucGCGCCGAggucCUg--CCGGCcACc -3' miRNA: 3'- -GCGCGC---UGCGGCU----GAaaaGGCCGuUG- -5' |
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24012 | 3' | -55.4 | NC_005262.1 | + | 18002 | 0.71 | 0.462112 |
Target: 5'- gGCGuCGGCGCCGA-----UCGGCGGCu -3' miRNA: 3'- gCGC-GCUGCGGCUgaaaaGGCCGUUG- -5' |
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24012 | 3' | -55.4 | NC_005262.1 | + | 24557 | 0.71 | 0.462112 |
Target: 5'- aGCGCGACGCuCGug----CCGuGCAGCg -3' miRNA: 3'- gCGCGCUGCG-GCugaaaaGGC-CGUUG- -5' |
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24012 | 3' | -55.4 | NC_005262.1 | + | 30238 | 0.71 | 0.452331 |
Target: 5'- uCGCGuCGGCauccGCCGGCgc-UUCGGCGACc -3' miRNA: 3'- -GCGC-GCUG----CGGCUGaaaAGGCCGUUG- -5' |
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24012 | 3' | -55.4 | NC_005262.1 | + | 6548 | 0.71 | 0.482001 |
Target: 5'- cCGCGuCGAUGCCGGCgucucgCCGG-AGCc -3' miRNA: 3'- -GCGC-GCUGCGGCUGaaaa--GGCCgUUG- -5' |
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24012 | 3' | -55.4 | NC_005262.1 | + | 45765 | 0.71 | 0.482001 |
Target: 5'- -aCGCGACGCCGAUcggcaUCgCGGCGAa -3' miRNA: 3'- gcGCGCUGCGGCUGaaa--AG-GCCGUUg -5' |
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24012 | 3' | -55.4 | NC_005262.1 | + | 47921 | 0.71 | 0.472004 |
Target: 5'- -uUGCaGACGCCGAgCg---CCGGCGACa -3' miRNA: 3'- gcGCG-CUGCGGCU-GaaaaGGCCGUUG- -5' |
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24012 | 3' | -55.4 | NC_005262.1 | + | 5868 | 0.71 | 0.482001 |
Target: 5'- gCGCGCGGCGCaagauGGCcugUUUCCGGaUGGCc -3' miRNA: 3'- -GCGCGCUGCGg----CUGa--AAAGGCC-GUUG- -5' |
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24012 | 3' | -55.4 | NC_005262.1 | + | 30154 | 0.7 | 0.4921 |
Target: 5'- uGC-CGGCGUCGuCgucgCCGGCAGCa -3' miRNA: 3'- gCGcGCUGCGGCuGaaaaGGCCGUUG- -5' |
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24012 | 3' | -55.4 | NC_005262.1 | + | 59059 | 0.7 | 0.4921 |
Target: 5'- gGCGUGAggcCGCCGGCgg--CCGGCu-- -3' miRNA: 3'- gCGCGCU---GCGGCUGaaaaGGCCGuug -5' |
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24012 | 3' | -55.4 | NC_005262.1 | + | 50719 | 0.7 | 0.4921 |
Target: 5'- uGCuCGGCGgCGACaUUUCCaGCAACa -3' miRNA: 3'- gCGcGCUGCgGCUGaAAAGGcCGUUG- -5' |
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24012 | 3' | -55.4 | NC_005262.1 | + | 23368 | 0.7 | 0.543931 |
Target: 5'- gCGCGCGGCGgCGAagg--CCcGCAACg -3' miRNA: 3'- -GCGCGCUGCgGCUgaaaaGGcCGUUG- -5' |
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24012 | 3' | -55.4 | NC_005262.1 | + | 57302 | 0.7 | 0.4921 |
Target: 5'- gCGuCGCGAUGCCGcCga--CCGGCAGg -3' miRNA: 3'- -GC-GCGCUGCGGCuGaaaaGGCCGUUg -5' |
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24012 | 3' | -55.4 | NC_005262.1 | + | 46707 | 0.7 | 0.543931 |
Target: 5'- gCGCGCGcaguggacaaGCCGGCgcaaUCCGGCAc- -3' miRNA: 3'- -GCGCGCug--------CGGCUGaaa-AGGCCGUug -5' |
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24012 | 3' | -55.4 | NC_005262.1 | + | 56606 | 0.7 | 0.522954 |
Target: 5'- cCGCGCGugGgCGACgaag--GGCAGCu -3' miRNA: 3'- -GCGCGCugCgGCUGaaaaggCCGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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