miRNA display CGI


Results 1 - 20 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24012 3' -55.4 NC_005262.1 + 25934 1.02 0.003656
Target:  5'- aCGCGCGACGCCGAC-UUUCCGGCAACg -3'
miRNA:   3'- -GCGCGCUGCGGCUGaAAAGGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 47844 0.83 0.089642
Target:  5'- cCGCGCGAUGCCGGgUUcgccgcggCCGGCGGCg -3'
miRNA:   3'- -GCGCGCUGCGGCUgAAaa------GGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 48774 0.82 0.095892
Target:  5'- gGCGCGGCGuCCGGCUggaacgcgcuggCCGGCAGCu -3'
miRNA:   3'- gCGCGCUGC-GGCUGAaaa---------GGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 46775 0.81 0.106043
Target:  5'- gCGCGCGGCGCUGACUgcaUCGGCGGg -3'
miRNA:   3'- -GCGCGCUGCGGCUGAaaaGGCCGUUg -5'
24012 3' -55.4 NC_005262.1 + 46542 0.79 0.147597
Target:  5'- aGCGCGGCGCCGGCcgccgcUCCcGCGACg -3'
miRNA:   3'- gCGCGCUGCGGCUGaaa---AGGcCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 32810 0.79 0.160097
Target:  5'- uCGCGUucGACGUCGGCcucaugUCCGGCGACg -3'
miRNA:   3'- -GCGCG--CUGCGGCUGaaa---AGGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 5320 0.78 0.168953
Target:  5'- aGCGCGGCGUCGACgcca-CGGCGAUc -3'
miRNA:   3'- gCGCGCUGCGGCUGaaaagGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 53452 0.78 0.173544
Target:  5'- aGCGCGGCGCCGGCg--UCgaGGaCAACg -3'
miRNA:   3'- gCGCGCUGCGGCUGaaaAGg-CC-GUUG- -5'
24012 3' -55.4 NC_005262.1 + 47618 0.78 0.187989
Target:  5'- gGC-CGACGCCGAUgaUUUCgGGCAGCg -3'
miRNA:   3'- gCGcGCUGCGGCUGa-AAAGgCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 11730 0.77 0.198197
Target:  5'- aGCGCGACGCCGGCgccgCCGaGcCGAUg -3'
miRNA:   3'- gCGCGCUGCGGCUGaaaaGGC-C-GUUG- -5'
24012 3' -55.4 NC_005262.1 + 35920 0.77 0.220069
Target:  5'- gGuCGCGGCGCCGACgccgcUCCGGCc-- -3'
miRNA:   3'- gC-GCGCUGCGGCUGaaa--AGGCCGuug -5'
24012 3' -55.4 NC_005262.1 + 29884 0.76 0.243967
Target:  5'- gCGCGCGGCGCUucaggaagauGACggUUCgGGCGAUg -3'
miRNA:   3'- -GCGCGCUGCGG----------CUGaaAAGgCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 55915 0.75 0.276827
Target:  5'- uCGCGCaGuACGUCGACcg-UCCGGCGAUc -3'
miRNA:   3'- -GCGCG-C-UGCGGCUGaaaAGGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 32888 0.74 0.305586
Target:  5'- cCGCGuCGaACGUCGGCcaagCCGGCGGCg -3'
miRNA:   3'- -GCGC-GC-UGCGGCUGaaaaGGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 2658 0.74 0.320803
Target:  5'- uGCGCGGCGCCGgGCggcgUCCuGGCcGCc -3'
miRNA:   3'- gCGCGCUGCGGC-UGaaa-AGG-CCGuUG- -5'
24012 3' -55.4 NC_005262.1 + 6405 0.74 0.327047
Target:  5'- gGCG-GGCGCCGACgagaggcggCCGGCGAg -3'
miRNA:   3'- gCGCgCUGCGGCUGaaaa-----GGCCGUUg -5'
24012 3' -55.4 NC_005262.1 + 52796 0.74 0.328622
Target:  5'- aGCGCGGCcucguCCGGCgucggCCGGCGGCc -3'
miRNA:   3'- gCGCGCUGc----GGCUGaaaa-GGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 32987 0.74 0.328622
Target:  5'- gCGUGCGACGCCGccgGCUUggCCGacguucgacGCGGCg -3'
miRNA:   3'- -GCGCGCUGCGGC---UGAAaaGGC---------CGUUG- -5'
24012 3' -55.4 NC_005262.1 + 15379 0.74 0.328622
Target:  5'- uGCGCGGCGaauCGACga--CUGGCAGCa -3'
miRNA:   3'- gCGCGCUGCg--GCUGaaaaGGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 16574 0.73 0.352916
Target:  5'- aGCGCcuCGCCcaGCUcgUCCGGCAGCg -3'
miRNA:   3'- gCGCGcuGCGGc-UGAaaAGGCCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.