miRNA display CGI


Results 21 - 40 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24012 3' -55.4 NC_005262.1 + 57591 0.73 0.361292
Target:  5'- gGCGCGACGCUGAac--UUCGGCGc- -3'
miRNA:   3'- gCGCGCUGCGGCUgaaaAGGCCGUug -5'
24012 3' -55.4 NC_005262.1 + 16355 0.73 0.361292
Target:  5'- gCGCGCugaucGGCGCCGcCgcgUUCGGCAACc -3'
miRNA:   3'- -GCGCG-----CUGCGGCuGaaaAGGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 60486 0.73 0.366384
Target:  5'- aCGUGCGccaugcCGCCGACgaucuugcggCCGGCGACc -3'
miRNA:   3'- -GCGCGCu-----GCGGCUGaaaa------GGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 33464 0.73 0.369805
Target:  5'- uGgGCGGCGUCGACgaucacggCCGGCGGg -3'
miRNA:   3'- gCgCGCUGCGGCUGaaaa----GGCCGUUg -5'
24012 3' -55.4 NC_005262.1 + 46552 0.73 0.373249
Target:  5'- uGCGuCGugGCCGGCgcggcauucgggUCCGGCGcggGCg -3'
miRNA:   3'- gCGC-GCugCGGCUGaaa---------AGGCCGU---UG- -5'
24012 3' -55.4 NC_005262.1 + 25246 0.73 0.376714
Target:  5'- cCGCGCGcaACGCCGGCUccugcgccgccUCUGGCAccGCa -3'
miRNA:   3'- -GCGCGC--UGCGGCUGAaa---------AGGCCGU--UG- -5'
24012 3' -55.4 NC_005262.1 + 46852 0.73 0.378455
Target:  5'- cCGCGCGuCGCCGcCUguacgaCCGGCGugGCg -3'
miRNA:   3'- -GCGCGCuGCGGCuGAaaa---GGCCGU--UG- -5'
24012 3' -55.4 NC_005262.1 + 17575 0.72 0.387239
Target:  5'- gCGCGCGAaGCCGAggagaagCUGGCGGCg -3'
miRNA:   3'- -GCGCGCUgCGGCUgaaaa--GGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 765 0.72 0.395258
Target:  5'- aCGCGCucguCGCCGagguucgggcgugGCUUgaCCGGCAGCa -3'
miRNA:   3'- -GCGCGcu--GCGGC-------------UGAAaaGGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 31628 0.72 0.396156
Target:  5'- uGCGCGGCaaGCCGACcua--CGGCGAUg -3'
miRNA:   3'- gCGCGCUG--CGGCUGaaaagGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 4831 0.72 0.396156
Target:  5'- gGCGCGACGCaguGCcUUUCCGGUGGa -3'
miRNA:   3'- gCGCGCUGCGgc-UGaAAAGGCCGUUg -5'
24012 3' -55.4 NC_005262.1 + 48169 0.72 0.396156
Target:  5'- gCGCGuCGGCGCCGggcgGCUcgUCgCGGCAGg -3'
miRNA:   3'- -GCGC-GCUGCGGC----UGAaaAG-GCCGUUg -5'
24012 3' -55.4 NC_005262.1 + 28162 0.72 0.405205
Target:  5'- gCGCGCGGCGCa-ACUgcgCgCGGCGGCc -3'
miRNA:   3'- -GCGCGCUGCGgcUGAaaaG-GCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 40355 0.72 0.414382
Target:  5'- gCGCGCuGAUGUCGAUcg--UCGGCGACg -3'
miRNA:   3'- -GCGCG-CUGCGGCUGaaaaGGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 58293 0.72 0.423687
Target:  5'- aCGgGCGGCGCCG-CUc-UCCgcaGGCGACg -3'
miRNA:   3'- -GCgCGCUGCGGCuGAaaAGG---CCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 17491 0.72 0.423687
Target:  5'- gCGCGCGccGCGCgCGACgcgUCgauCGGCAGCc -3'
miRNA:   3'- -GCGCGC--UGCG-GCUGaaaAG---GCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 41776 0.72 0.423687
Target:  5'- uGCGgcauaGAUGCCGAUgccggugCCGGCGGCg -3'
miRNA:   3'- gCGCg----CUGCGGCUGaaaa---GGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 15248 0.72 0.432167
Target:  5'- uGCGUGccguccaacauccGCGCCGACUcgacgCCGGCcGCg -3'
miRNA:   3'- gCGCGC-------------UGCGGCUGAaaa--GGCCGuUG- -5'
24012 3' -55.4 NC_005262.1 + 58166 0.72 0.433115
Target:  5'- uGCGUaGCGUCG---UUUCCGGCAACa -3'
miRNA:   3'- gCGCGcUGCGGCugaAAAGGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 49348 0.71 0.442664
Target:  5'- gCGCGCGccgcgcuCGCUGACgac-UCGGCGACg -3'
miRNA:   3'- -GCGCGCu------GCGGCUGaaaaGGCCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.