miRNA display CGI


Results 41 - 60 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24012 3' -55.4 NC_005262.1 + 30238 0.71 0.452331
Target:  5'- uCGCGuCGGCauccGCCGGCgc-UUCGGCGACc -3'
miRNA:   3'- -GCGC-GCUG----CGGCUGaaaAGGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 32922 0.71 0.459167
Target:  5'- aCGCGCGACGCucccagcgccuucaCGAUcgcuccgaCCGGCAACc -3'
miRNA:   3'- -GCGCGCUGCG--------------GCUGaaaa----GGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 41203 0.71 0.462112
Target:  5'- gCGCGCcguGACGCgcacgaucuCGACguggCCGGCGGCg -3'
miRNA:   3'- -GCGCG---CUGCG---------GCUGaaaaGGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 24557 0.71 0.462112
Target:  5'- aGCGCGACGCuCGug----CCGuGCAGCg -3'
miRNA:   3'- gCGCGCUGCG-GCugaaaaGGC-CGUUG- -5'
24012 3' -55.4 NC_005262.1 + 18002 0.71 0.462112
Target:  5'- gGCGuCGGCGCCGA-----UCGGCGGCu -3'
miRNA:   3'- gCGC-GCUGCGGCUgaaaaGGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 53571 0.71 0.462112
Target:  5'- gGCGCGcacGCGCUGA-----CCGGCAGCa -3'
miRNA:   3'- gCGCGC---UGCGGCUgaaaaGGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 12524 0.71 0.462112
Target:  5'- cCGCGCGACGCgauCGcCUccaugUUgCGGCGGCa -3'
miRNA:   3'- -GCGCGCUGCG---GCuGAa----AAgGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 47921 0.71 0.472004
Target:  5'- -uUGCaGACGCCGAgCg---CCGGCGACa -3'
miRNA:   3'- gcGCG-CUGCGGCU-GaaaaGGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 45765 0.71 0.482001
Target:  5'- -aCGCGACGCCGAUcggcaUCgCGGCGAa -3'
miRNA:   3'- gcGCGCUGCGGCUGaaa--AG-GCCGUUg -5'
24012 3' -55.4 NC_005262.1 + 5868 0.71 0.482001
Target:  5'- gCGCGCGGCGCaagauGGCcugUUUCCGGaUGGCc -3'
miRNA:   3'- -GCGCGCUGCGg----CUGa--AAAGGCC-GUUG- -5'
24012 3' -55.4 NC_005262.1 + 43951 0.71 0.482001
Target:  5'- gCGCGCGaucGCGCCGAggucCUg--CCGGCcACc -3'
miRNA:   3'- -GCGCGC---UGCGGCU----GAaaaGGCCGuUG- -5'
24012 3' -55.4 NC_005262.1 + 55646 0.71 0.482001
Target:  5'- gCGCGCucGugGCCG-Cg--UCCGGCAc- -3'
miRNA:   3'- -GCGCG--CugCGGCuGaaaAGGCCGUug -5'
24012 3' -55.4 NC_005262.1 + 6548 0.71 0.482001
Target:  5'- cCGCGuCGAUGCCGGCgucucgCCGG-AGCc -3'
miRNA:   3'- -GCGC-GCUGCGGCUGaaaa--GGCCgUUG- -5'
24012 3' -55.4 NC_005262.1 + 12672 0.7 0.4921
Target:  5'- -cCGCGACGCCu-Cg---CCGGCGGCa -3'
miRNA:   3'- gcGCGCUGCGGcuGaaaaGGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 51465 0.7 0.4921
Target:  5'- gGCGCGGCcuugGCCGGCg--UCgCGGaCGGCg -3'
miRNA:   3'- gCGCGCUG----CGGCUGaaaAG-GCC-GUUG- -5'
24012 3' -55.4 NC_005262.1 + 30154 0.7 0.4921
Target:  5'- uGC-CGGCGUCGuCgucgCCGGCAGCa -3'
miRNA:   3'- gCGcGCUGCGGCuGaaaaGGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 49185 0.7 0.4921
Target:  5'- gGCGCGcACGgCGAUgaucUCCGGCAu- -3'
miRNA:   3'- gCGCGC-UGCgGCUGaaa-AGGCCGUug -5'
24012 3' -55.4 NC_005262.1 + 52938 0.7 0.4921
Target:  5'- gGCcuGCGcCGCCugGGCUUcgCCGGCGGCa -3'
miRNA:   3'- gCG--CGCuGCGG--CUGAAaaGGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 59059 0.7 0.4921
Target:  5'- gGCGUGAggcCGCCGGCgg--CCGGCu-- -3'
miRNA:   3'- gCGCGCU---GCGGCUGaaaaGGCCGuug -5'
24012 3' -55.4 NC_005262.1 + 57302 0.7 0.4921
Target:  5'- gCGuCGCGAUGCCGcCga--CCGGCAGg -3'
miRNA:   3'- -GC-GCGCUGCGGCuGaaaaGGCCGUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.