miRNA display CGI


Results 61 - 80 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24012 3' -55.4 NC_005262.1 + 50719 0.7 0.4921
Target:  5'- uGCuCGGCGgCGACaUUUCCaGCAACa -3'
miRNA:   3'- gCGcGCUGCgGCUGaAAAGGcCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 33316 0.7 0.502295
Target:  5'- gCGCGuCGAUGuuGACg---UCGGCAAUg -3'
miRNA:   3'- -GCGC-GCUGCggCUGaaaaGGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 14354 0.7 0.502295
Target:  5'- uCGCGCuuUGCC-ACUUccgucUCCGGCGACg -3'
miRNA:   3'- -GCGCGcuGCGGcUGAAa----AGGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 30613 0.7 0.512581
Target:  5'- gGCGCGAagaucgagccgcCGCCGACgc--UCGGCAAg -3'
miRNA:   3'- gCGCGCU------------GCGGCUGaaaaGGCCGUUg -5'
24012 3' -55.4 NC_005262.1 + 33707 0.7 0.512581
Target:  5'- uGCGC--CGgCGGCUUUUCCuGCGACg -3'
miRNA:   3'- gCGCGcuGCgGCUGAAAAGGcCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 56606 0.7 0.522954
Target:  5'- cCGCGCGugGgCGACgaag--GGCAGCu -3'
miRNA:   3'- -GCGCGCugCgGCUGaaaaggCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 45920 0.7 0.522954
Target:  5'- uGCGCG-CGCCGAUcaagUCgGGCuACg -3'
miRNA:   3'- gCGCGCuGCGGCUGaaa-AGgCCGuUG- -5'
24012 3' -55.4 NC_005262.1 + 50407 0.7 0.533405
Target:  5'- uGCGCGGCgggcgcugcgGCCGGCUccucaaUCCGcGCGGCc -3'
miRNA:   3'- gCGCGCUG----------CGGCUGAaa----AGGC-CGUUG- -5'
24012 3' -55.4 NC_005262.1 + 46707 0.7 0.543931
Target:  5'- gCGCGCGcaguggacaaGCCGGCgcaaUCCGGCAc- -3'
miRNA:   3'- -GCGCGCug--------CGGCUGaaa-AGGCCGUug -5'
24012 3' -55.4 NC_005262.1 + 31297 0.7 0.543931
Target:  5'- gCGCGCGAucuUGCCuGACUUgu-CGGCGAg -3'
miRNA:   3'- -GCGCGCU---GCGG-CUGAAaagGCCGUUg -5'
24012 3' -55.4 NC_005262.1 + 23368 0.7 0.543931
Target:  5'- gCGCGCGGCGgCGAagg--CCcGCAACg -3'
miRNA:   3'- -GCGCGCUGCgGCUgaaaaGGcCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 12279 0.69 0.554523
Target:  5'- uCGCGgcCGGCgaGCCGAgCUUUcUCGGCAACg -3'
miRNA:   3'- -GCGC--GCUG--CGGCU-GAAAaGGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 47484 0.69 0.565175
Target:  5'- aCGCGCugaagaACGCCGGCUacUCCGaCGACu -3'
miRNA:   3'- -GCGCGc-----UGCGGCUGAaaAGGCcGUUG- -5'
24012 3' -55.4 NC_005262.1 + 23794 0.69 0.565175
Target:  5'- uCGcCGCGugGUCGACcgUgcgCCGGUAGa -3'
miRNA:   3'- -GC-GCGCugCGGCUGaaAa--GGCCGUUg -5'
24012 3' -55.4 NC_005262.1 + 30976 0.69 0.57588
Target:  5'- aGCGCGAgCGgcgucaccauCCGGCcg--CCGGCGACu -3'
miRNA:   3'- gCGCGCU-GC----------GGCUGaaaaGGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 13066 0.69 0.57588
Target:  5'- aCGCGCGGgucgcgguCGUCGACgccgagCCGGuCGGCg -3'
miRNA:   3'- -GCGCGCU--------GCGGCUGaaaa--GGCC-GUUG- -5'
24012 3' -55.4 NC_005262.1 + 40493 0.69 0.57588
Target:  5'- uCGC-CGACGCgCGGCUgaaUCCGcGCGAa -3'
miRNA:   3'- -GCGcGCUGCG-GCUGAaa-AGGC-CGUUg -5'
24012 3' -55.4 NC_005262.1 + 49835 0.69 0.57588
Target:  5'- gGCGCGGgcgcCGCCGGCg--UCgGuGCGGCu -3'
miRNA:   3'- gCGCGCU----GCGGCUGaaaAGgC-CGUUG- -5'
24012 3' -55.4 NC_005262.1 + 42929 0.69 0.584477
Target:  5'- gCGCGUGAUGCaCGgcagguugagcucgaGCUUUUCCugagacauggcgucgGGCGACg -3'
miRNA:   3'- -GCGCGCUGCG-GC---------------UGAAAAGG---------------CCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 17920 0.69 0.58663
Target:  5'- cCGCcgauCGGCGCCGACgccaaCGGCGAg -3'
miRNA:   3'- -GCGc---GCUGCGGCUGaaaagGCCGUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.