Results 21 - 40 of 206 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24012 | 3' | -55.4 | NC_005262.1 | + | 14227 | 0.66 | 0.757341 |
Target: 5'- gGCGCGAUGUCGACcacgCaCGaGCAGg -3' miRNA: 3'- gCGCGCUGCGGCUGaaaaG-GC-CGUUg -5' |
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24012 | 3' | -55.4 | NC_005262.1 | + | 1274 | 0.66 | 0.757341 |
Target: 5'- uCGCGCGGCGaacuCGcACUgggcUUCCGcGCAGg -3' miRNA: 3'- -GCGCGCUGCg---GC-UGAa---AAGGC-CGUUg -5' |
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24012 | 3' | -55.4 | NC_005262.1 | + | 12561 | 0.66 | 0.757341 |
Target: 5'- uCGCgGCGGCGCuCGucgagcugcuGCUgccgCCGGCGAg -3' miRNA: 3'- -GCG-CGCUGCG-GC----------UGAaaa-GGCCGUUg -5' |
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24012 | 3' | -55.4 | NC_005262.1 | + | 56176 | 0.66 | 0.757341 |
Target: 5'- aCGcCGUGAuCGCCGACUaccaUgCGGCAu- -3' miRNA: 3'- -GC-GCGCU-GCGGCUGAaa--AgGCCGUug -5' |
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24012 | 3' | -55.4 | NC_005262.1 | + | 45204 | 0.66 | 0.756327 |
Target: 5'- gCGCGCGGuguucgcggcaccCGCCGAgUUgagCgCGGuCAACg -3' miRNA: 3'- -GCGCGCU-------------GCGGCUgAAaa-G-GCC-GUUG- -5' |
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24012 | 3' | -55.4 | NC_005262.1 | + | 49897 | 0.66 | 0.750217 |
Target: 5'- uCGCGCGGCcgaucggGCCgGACggugcaggggcgUCCGGCGcgGCa -3' miRNA: 3'- -GCGCGCUG-------CGG-CUGaaa---------AGGCCGU--UG- -5' |
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24012 | 3' | -55.4 | NC_005262.1 | + | 59225 | 0.66 | 0.747146 |
Target: 5'- gCGCGCGGCGaCgCGGCccggCCGGUucGCc -3' miRNA: 3'- -GCGCGCUGC-G-GCUGaaaaGGCCGu-UG- -5' |
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24012 | 3' | -55.4 | NC_005262.1 | + | 22219 | 0.66 | 0.747146 |
Target: 5'- aGcCGCGGCgGCCaGACgauugCCGGCcACg -3' miRNA: 3'- gC-GCGCUG-CGG-CUGaaaa-GGCCGuUG- -5' |
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24012 | 3' | -55.4 | NC_005262.1 | + | 21632 | 0.66 | 0.747146 |
Target: 5'- aGUGCGACGgCGACggcgaCGGCc-- -3' miRNA: 3'- gCGCGCUGCgGCUGaaaagGCCGuug -5' |
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24012 | 3' | -55.4 | NC_005262.1 | + | 51240 | 0.66 | 0.747146 |
Target: 5'- uGCGCGcuCGgCGACUUcUUCaCGGCGu- -3' miRNA: 3'- gCGCGCu-GCgGCUGAA-AAG-GCCGUug -5' |
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24012 | 3' | -55.4 | NC_005262.1 | + | 28884 | 0.66 | 0.745094 |
Target: 5'- uGCuGgGACGCaCGACgaacgcagugUCCGGCGucGCg -3' miRNA: 3'- gCG-CgCUGCG-GCUGaaa-------AGGCCGU--UG- -5' |
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24012 | 3' | -55.4 | NC_005262.1 | + | 16441 | 0.66 | 0.736838 |
Target: 5'- aCGCgGCGGCGCCGAUcagcgcgCCGagccagaggaucGCGGCg -3' miRNA: 3'- -GCG-CGCUGCGGCUGaaaa---GGC------------CGUUG- -5' |
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24012 | 3' | -55.4 | NC_005262.1 | + | 51965 | 0.66 | 0.736838 |
Target: 5'- gCGCGCGccuGCGCuCGAaacugUCCGGUucGCa -3' miRNA: 3'- -GCGCGC---UGCG-GCUgaaa-AGGCCGu-UG- -5' |
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24012 | 3' | -55.4 | NC_005262.1 | + | 20586 | 0.66 | 0.736838 |
Target: 5'- aGCGCcGCGCCGAUgg-UgCGcGCGAUu -3' miRNA: 3'- gCGCGcUGCGGCUGaaaAgGC-CGUUG- -5' |
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24012 | 3' | -55.4 | NC_005262.1 | + | 17247 | 0.66 | 0.736838 |
Target: 5'- gCGCGCGGCcuuGCCGGCc-UUCuCGauuGCGACg -3' miRNA: 3'- -GCGCGCUG---CGGCUGaaAAG-GC---CGUUG- -5' |
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24012 | 3' | -55.4 | NC_005262.1 | + | 12953 | 0.66 | 0.736838 |
Target: 5'- uGCGCGAcggcauCGCCGACcgc-UCGGCGu- -3' miRNA: 3'- gCGCGCU------GCGGCUGaaaaGGCCGUug -5' |
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24012 | 3' | -55.4 | NC_005262.1 | + | 54441 | 0.66 | 0.736838 |
Target: 5'- cCGCGCG-CGCCGACcggaaguaUCaGcGCAACg -3' miRNA: 3'- -GCGCGCuGCGGCUGaaa-----AGgC-CGUUG- -5' |
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24012 | 3' | -55.4 | NC_005262.1 | + | 62898 | 0.66 | 0.736838 |
Target: 5'- cCGCcaGCG-CGCCGACgag-CUGGCGcGCa -3' miRNA: 3'- -GCG--CGCuGCGGCUGaaaaGGCCGU-UG- -5' |
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24012 | 3' | -55.4 | NC_005262.1 | + | 27460 | 0.66 | 0.736838 |
Target: 5'- uCGCGgaGGCGCCGACga---CGGCcuCg -3' miRNA: 3'- -GCGCg-CUGCGGCUGaaaagGCCGuuG- -5' |
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24012 | 3' | -55.4 | NC_005262.1 | + | 16005 | 0.66 | 0.732686 |
Target: 5'- aGCGCGGCaCCGACgacgagcaGGCGAUc -3' miRNA: 3'- gCGCGCUGcGGCUGaaaagg--CCGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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