miRNA display CGI


Results 41 - 60 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24012 3' -55.4 NC_005262.1 + 59461 0.66 0.726428
Target:  5'- uGCGCGAgCGCCuggagcucGGCguugCCGGCGuACu -3'
miRNA:   3'- gCGCGCU-GCGG--------CUGaaaaGGCCGU-UG- -5'
24012 3' -55.4 NC_005262.1 + 51368 0.66 0.726428
Target:  5'- uGCGCaGCaGCCGGCgg--CCGGUGAg -3'
miRNA:   3'- gCGCGcUG-CGGCUGaaaaGGCCGUUg -5'
24012 3' -55.4 NC_005262.1 + 49753 0.66 0.726428
Target:  5'- aCGCcgGCGGCGCCcGCgcccgaggcUCCGGCcGCu -3'
miRNA:   3'- -GCG--CGCUGCGGcUGaaa------AGGCCGuUG- -5'
24012 3' -55.4 NC_005262.1 + 34497 0.66 0.726428
Target:  5'- gCGCgGCGGCGCgCGACUUcUgCGaGaCGACg -3'
miRNA:   3'- -GCG-CGCUGCG-GCUGAAaAgGC-C-GUUG- -5'
24012 3' -55.4 NC_005262.1 + 50274 0.66 0.726428
Target:  5'- gGCGCGcccGCGCCGGCcgagCCcGUGACg -3'
miRNA:   3'- gCGCGC---UGCGGCUGaaaaGGcCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 46920 0.67 0.715926
Target:  5'- aCGC-CGGCGC--GCUUUUCuCGGCGAg -3'
miRNA:   3'- -GCGcGCUGCGgcUGAAAAG-GCCGUUg -5'
24012 3' -55.4 NC_005262.1 + 43783 0.67 0.715926
Target:  5'- aGCGCGuCGCCGcGCgaaUUCGGCccGGCu -3'
miRNA:   3'- gCGCGCuGCGGC-UGaaaAGGCCG--UUG- -5'
24012 3' -55.4 NC_005262.1 + 51171 0.67 0.715926
Target:  5'- gCGCGCagcaGGCaGCCGACgacg-CGGCGGCc -3'
miRNA:   3'- -GCGCG----CUG-CGGCUGaaaagGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 50041 0.67 0.708527
Target:  5'- aGC-CGGCGCCGGCUgcucccgagacgaagCCGGaGACg -3'
miRNA:   3'- gCGcGCUGCGGCUGAaaa------------GGCCgUUG- -5'
24012 3' -55.4 NC_005262.1 + 4221 0.67 0.705344
Target:  5'- -aCGCGGCGCCGuuUUUUuaugcCCGGCuuucGCg -3'
miRNA:   3'- gcGCGCUGCGGCugAAAA-----GGCCGu---UG- -5'
24012 3' -55.4 NC_005262.1 + 45854 0.67 0.705344
Target:  5'- uCGcCGCGAUGCCGAUcggcgucgcgUUCgCGGgAACg -3'
miRNA:   3'- -GC-GCGCUGCGGCUGaa--------AAG-GCCgUUG- -5'
24012 3' -55.4 NC_005262.1 + 17495 0.67 0.705344
Target:  5'- aGCGUGGCGCCcaGCg--UCuCGGCAu- -3'
miRNA:   3'- gCGCGCUGCGGc-UGaaaAG-GCCGUug -5'
24012 3' -55.4 NC_005262.1 + 21873 0.67 0.705344
Target:  5'- gGCGCuGAaGCCGACcgcgcagCCGGaCGACg -3'
miRNA:   3'- gCGCG-CUgCGGCUGaaaa---GGCC-GUUG- -5'
24012 3' -55.4 NC_005262.1 + 51891 0.67 0.704282
Target:  5'- aGC-CGAgcCGCCGaacggcaccgaccGCUUcgCCGGCAACa -3'
miRNA:   3'- gCGcGCU--GCGGC-------------UGAAaaGGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 32867 0.67 0.704282
Target:  5'- gGCGCGcCGCCGgugucgaGCUUgu-CGGCGAUc -3'
miRNA:   3'- gCGCGCuGCGGC-------UGAAaagGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 40747 0.67 0.694693
Target:  5'- gGCgGCGGCGCguuccaaaucaaCGGCUaugCUGGCGGCa -3'
miRNA:   3'- gCG-CGCUGCG------------GCUGAaaaGGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 43418 0.67 0.694693
Target:  5'- gGCGCGGCGCucaacgucuaucCGAUcga--CGGCGACg -3'
miRNA:   3'- gCGCGCUGCG------------GCUGaaaagGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 22122 0.67 0.694693
Target:  5'- uGCaCGugGCCGGCaaucgUCUGGCcGCc -3'
miRNA:   3'- gCGcGCugCGGCUGaaa--AGGCCGuUG- -5'
24012 3' -55.4 NC_005262.1 + 7635 0.67 0.694693
Target:  5'- gGC-CGaAUGUCGACg---CCGGCGGCg -3'
miRNA:   3'- gCGcGC-UGCGGCUGaaaaGGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 8289 0.67 0.694693
Target:  5'- cCGCGCGGaucauCGCugCGGCgccUUCCGGCGu- -3'
miRNA:   3'- -GCGCGCU-----GCG--GCUGaa-AAGGCCGUug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.