Results 61 - 80 of 206 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24012 | 3' | -55.4 | NC_005262.1 | + | 7719 | 0.67 | 0.694693 |
Target: 5'- cCGC-CGGCGUCGACa--UUCGGcCAACg -3' miRNA: 3'- -GCGcGCUGCGGCUGaaaAGGCC-GUUG- -5' |
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24012 | 3' | -55.4 | NC_005262.1 | + | 8289 | 0.67 | 0.694693 |
Target: 5'- cCGCGCGGaucauCGCugCGGCgccUUCCGGCGu- -3' miRNA: 3'- -GCGCGCU-----GCG--GCUGaa-AAGGCCGUug -5' |
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24012 | 3' | -55.4 | NC_005262.1 | + | 37877 | 0.67 | 0.692555 |
Target: 5'- -uCGCGACGUCGGuaucguaaaUCUGGCAGCg -3' miRNA: 3'- gcGCGCUGCGGCUgaaa-----AGGCCGUUG- -5' |
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24012 | 3' | -55.4 | NC_005262.1 | + | 58883 | 0.67 | 0.683982 |
Target: 5'- cCGCGCGuuggcugcugccGCGCUGcGCgaucaggCCGGCGGCc -3' miRNA: 3'- -GCGCGC------------UGCGGC-UGaaaa---GGCCGUUG- -5' |
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24012 | 3' | -55.4 | NC_005262.1 | + | 51378 | 0.67 | 0.683982 |
Target: 5'- -cCGCGACGCCGGCcaaggCCGcGCcuGACc -3' miRNA: 3'- gcGCGCUGCGGCUGaaaa-GGC-CG--UUG- -5' |
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24012 | 3' | -55.4 | NC_005262.1 | + | 12659 | 0.67 | 0.683982 |
Target: 5'- gCGCGCGGCGCgCGGCgaacCCuGCGc- -3' miRNA: 3'- -GCGCGCUGCG-GCUGaaaaGGcCGUug -5' |
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24012 | 3' | -55.4 | NC_005262.1 | + | 2480 | 0.67 | 0.683982 |
Target: 5'- gCGCGUGGUGCCGcGCUUggcgaCCaGCAGCa -3' miRNA: 3'- -GCGCGCUGCGGC-UGAAaa---GGcCGUUG- -5' |
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24012 | 3' | -55.4 | NC_005262.1 | + | 34565 | 0.67 | 0.683982 |
Target: 5'- cCGCGCGgaugugcucgaACGCCGuaggcUCCgGGCAGCc -3' miRNA: 3'- -GCGCGC-----------UGCGGCugaaaAGG-CCGUUG- -5' |
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24012 | 3' | -55.4 | NC_005262.1 | + | 54405 | 0.67 | 0.683982 |
Target: 5'- aGCGCGuCGauGACg--UCCuGGCGGCu -3' miRNA: 3'- gCGCGCuGCggCUGaaaAGG-CCGUUG- -5' |
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24012 | 3' | -55.4 | NC_005262.1 | + | 22926 | 0.67 | 0.683982 |
Target: 5'- aCGCGCu-CGCCGACgccaugcUCCGcGCGGg -3' miRNA: 3'- -GCGCGcuGCGGCUGaaa----AGGC-CGUUg -5' |
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24012 | 3' | -55.4 | NC_005262.1 | + | 24957 | 0.67 | 0.677533 |
Target: 5'- gGCGCGcccagcuucaggaacAgGCCGGCUUggUCgaGGCGGCa -3' miRNA: 3'- gCGCGC---------------UgCGGCUGAAa-AGg-CCGUUG- -5' |
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24012 | 3' | -55.4 | NC_005262.1 | + | 23399 | 0.67 | 0.673224 |
Target: 5'- uGCGCGGCGCCuugaugcGCUUga-UGGCGAa -3' miRNA: 3'- gCGCGCUGCGGc------UGAAaagGCCGUUg -5' |
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24012 | 3' | -55.4 | NC_005262.1 | + | 61157 | 0.67 | 0.673224 |
Target: 5'- uGCGCcuuCGUCGACggcguaUCCGGCAc- -3' miRNA: 3'- gCGCGcu-GCGGCUGaaa---AGGCCGUug -5' |
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24012 | 3' | -55.4 | NC_005262.1 | + | 22422 | 0.67 | 0.673224 |
Target: 5'- aGCGC--CGCCuGCUcg-CCGGCAACc -3' miRNA: 3'- gCGCGcuGCGGcUGAaaaGGCCGUUG- -5' |
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24012 | 3' | -55.4 | NC_005262.1 | + | 4558 | 0.67 | 0.673224 |
Target: 5'- gCGCGCGGCGCaucucGCgccagCGGCGGCg -3' miRNA: 3'- -GCGCGCUGCGgc---UGaaaagGCCGUUG- -5' |
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24012 | 3' | -55.4 | NC_005262.1 | + | 41664 | 0.67 | 0.673224 |
Target: 5'- cCG-GCGGCGCCGucauCgccgCCGGCAccgGCa -3' miRNA: 3'- -GCgCGCUGCGGCu---GaaaaGGCCGU---UG- -5' |
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24012 | 3' | -55.4 | NC_005262.1 | + | 42269 | 0.67 | 0.673224 |
Target: 5'- uGCgGCGACGagCGGCacgggcaCCGGCGACg -3' miRNA: 3'- gCG-CGCUGCg-GCUGaaaa---GGCCGUUG- -5' |
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24012 | 3' | -55.4 | NC_005262.1 | + | 49394 | 0.67 | 0.673224 |
Target: 5'- cCGCG-GGCGUCGcaACUggucugUUCGGCGGCa -3' miRNA: 3'- -GCGCgCUGCGGC--UGAaa----AGGCCGUUG- -5' |
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24012 | 3' | -55.4 | NC_005262.1 | + | 45290 | 0.67 | 0.673224 |
Target: 5'- cCGCGCGaACGUCGGCaucgUCGGCcaaGGCu -3' miRNA: 3'- -GCGCGC-UGCGGCUGaaaaGGCCG---UUG- -5' |
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24012 | 3' | -55.4 | NC_005262.1 | + | 49707 | 0.67 | 0.673224 |
Target: 5'- cCGCGaCGGCGUgccgggCGGCgaa-CCGGCGGCc -3' miRNA: 3'- -GCGC-GCUGCG------GCUGaaaaGGCCGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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