miRNA display CGI


Results 81 - 100 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24012 3' -55.4 NC_005262.1 + 42269 0.67 0.673224
Target:  5'- uGCgGCGACGagCGGCacgggcaCCGGCGACg -3'
miRNA:   3'- gCG-CGCUGCg-GCUGaaaa---GGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 23399 0.67 0.673224
Target:  5'- uGCGCGGCGCCuugaugcGCUUga-UGGCGAa -3'
miRNA:   3'- gCGCGCUGCGGc------UGAAaagGCCGUUg -5'
24012 3' -55.4 NC_005262.1 + 58954 0.67 0.672146
Target:  5'- gCGCGCagcagucGAaccaGCCGGCcg--CCGGCGGCc -3'
miRNA:   3'- -GCGCG-------CUg---CGGCUGaaaaGGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 11636 0.68 0.662428
Target:  5'- gCGCGUGAUGC--ACUUcagCCGGCGAg -3'
miRNA:   3'- -GCGCGCUGCGgcUGAAaa-GGCCGUUg -5'
24012 3' -55.4 NC_005262.1 + 5186 0.68 0.662428
Target:  5'- uCGCG-GGCGCgGGCgcggCCGGCGc- -3'
miRNA:   3'- -GCGCgCUGCGgCUGaaaaGGCCGUug -5'
24012 3' -55.4 NC_005262.1 + 43916 0.68 0.662428
Target:  5'- aGCGCGGCgccaaccgcgGCCGACUacaacacgCUGcGCGACg -3'
miRNA:   3'- gCGCGCUG----------CGGCUGAaaa-----GGC-CGUUG- -5'
24012 3' -55.4 NC_005262.1 + 26413 0.68 0.662428
Target:  5'- aCGCGCGACGCguucccGCUgcUCUGGUucGACg -3'
miRNA:   3'- -GCGCGCUGCGgc----UGAaaAGGCCG--UUG- -5'
24012 3' -55.4 NC_005262.1 + 52611 0.68 0.661347
Target:  5'- aGCGCGAUcuccucgGCCGACU--UCuCGGCcAUg -3'
miRNA:   3'- gCGCGCUG-------CGGCUGAaaAG-GCCGuUG- -5'
24012 3' -55.4 NC_005262.1 + 35592 0.68 0.655936
Target:  5'- uGCuCGGCGCgGGCUcggcacagauggcguUgcagucgUCCGGCAACg -3'
miRNA:   3'- gCGcGCUGCGgCUGA---------------Aa------AGGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 17677 0.68 0.651604
Target:  5'- cCGCGCGcuGCGCCGccaGCUUcUCCucGGCuuCg -3'
miRNA:   3'- -GCGCGC--UGCGGC---UGAAaAGG--CCGuuG- -5'
24012 3' -55.4 NC_005262.1 + 17568 0.68 0.651604
Target:  5'- gCGCGCGGCGCgCG-CUUcgUCCuggaacucGGCGAa -3'
miRNA:   3'- -GCGCGCUGCG-GCuGAAa-AGG--------CCGUUg -5'
24012 3' -55.4 NC_005262.1 + 15496 0.68 0.651604
Target:  5'- aGCGCGGCgGCUcGCUca-CCGGCGAg -3'
miRNA:   3'- gCGCGCUG-CGGcUGAaaaGGCCGUUg -5'
24012 3' -55.4 NC_005262.1 + 48411 0.68 0.649437
Target:  5'- aGCGCGGCGaaaucccgaacaCGACgga--CGGCGGCa -3'
miRNA:   3'- gCGCGCUGCg-----------GCUGaaaagGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 48466 0.68 0.640763
Target:  5'- gGCGCGGuCGuaacCCGACUgauagCCGGCcGCc -3'
miRNA:   3'- gCGCGCU-GC----GGCUGAaaa--GGCCGuUG- -5'
24012 3' -55.4 NC_005262.1 + 17078 0.68 0.640763
Target:  5'- aGCGCG-CGCuCGGCcgg--CGGCAGCa -3'
miRNA:   3'- gCGCGCuGCG-GCUGaaaagGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 49448 0.68 0.640763
Target:  5'- gCGCGCGuCGCCGAgUcgUCagcgaGcGCGGCg -3'
miRNA:   3'- -GCGCGCuGCGGCUgAaaAGg----C-CGUUG- -5'
24012 3' -55.4 NC_005262.1 + 57642 0.68 0.640763
Target:  5'- uGCGCGuCGagaaCGACUcgaUCGGCGGCa -3'
miRNA:   3'- gCGCGCuGCg---GCUGAaaaGGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 63656 0.68 0.640763
Target:  5'- gCGgGCGAa-CUGGCUggaauugCCGGCGACg -3'
miRNA:   3'- -GCgCGCUgcGGCUGAaaa----GGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 24212 0.68 0.640763
Target:  5'- aGcCGCGACGCUG-Cg---CCGGCAc- -3'
miRNA:   3'- gC-GCGCUGCGGCuGaaaaGGCCGUug -5'
24012 3' -55.4 NC_005262.1 + 32782 0.68 0.639679
Target:  5'- uGuCGCccaccugGAgGCCGGCgg--CCGGCAGCg -3'
miRNA:   3'- gC-GCG-------CUgCGGCUGaaaaGGCCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.