miRNA display CGI


Results 1 - 20 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24012 3' -55.4 NC_005262.1 + 167 0.68 0.619068
Target:  5'- gCGUGCGGCgcgGCCGACUUcUUCgCGaGCcGCg -3'
miRNA:   3'- -GCGCGCUG---CGGCUGAA-AAG-GC-CGuUG- -5'
24012 3' -55.4 NC_005262.1 + 765 0.72 0.395258
Target:  5'- aCGCGCucguCGCCGagguucgggcgugGCUUgaCCGGCAGCa -3'
miRNA:   3'- -GCGCGcu--GCGGC-------------UGAAaaGGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 1274 0.66 0.757341
Target:  5'- uCGCGCGGCGaacuCGcACUgggcUUCCGcGCAGg -3'
miRNA:   3'- -GCGCGCUGCg---GC-UGAa---AAGGC-CGUUg -5'
24012 3' -55.4 NC_005262.1 + 2480 0.67 0.683982
Target:  5'- gCGCGUGGUGCCGcGCUUggcgaCCaGCAGCa -3'
miRNA:   3'- -GCGCGCUGCGGC-UGAAaa---GGcCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 2658 0.74 0.320803
Target:  5'- uGCGCGGCGCCGgGCggcgUCCuGGCcGCc -3'
miRNA:   3'- gCGCGCUGCGGC-UGaaa-AGG-CCGuUG- -5'
24012 3' -55.4 NC_005262.1 + 4221 0.67 0.705344
Target:  5'- -aCGCGGCGCCGuuUUUUuaugcCCGGCuuucGCg -3'
miRNA:   3'- gcGCGCUGCGGCugAAAA-----GGCCGu---UG- -5'
24012 3' -55.4 NC_005262.1 + 4558 0.67 0.673224
Target:  5'- gCGCGCGGCGCaucucGCgccagCGGCGGCg -3'
miRNA:   3'- -GCGCGCUGCGgc---UGaaaagGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 4831 0.72 0.396156
Target:  5'- gGCGCGACGCaguGCcUUUCCGGUGGa -3'
miRNA:   3'- gCGCGCUGCGgc-UGaAAAGGCCGUUg -5'
24012 3' -55.4 NC_005262.1 + 5138 0.66 0.767411
Target:  5'- aCGgGCGGCGCUGAUccugCuCGGCGc- -3'
miRNA:   3'- -GCgCGCUGCGGCUGaaaaG-GCCGUug -5'
24012 3' -55.4 NC_005262.1 + 5186 0.68 0.662428
Target:  5'- uCGCG-GGCGCgGGCgcggCCGGCGc- -3'
miRNA:   3'- -GCGCgCUGCGgCUGaaaaGGCCGUug -5'
24012 3' -55.4 NC_005262.1 + 5320 0.78 0.168953
Target:  5'- aGCGCGGCGUCGACgcca-CGGCGAUc -3'
miRNA:   3'- gCGCGCUGCGGCUGaaaagGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 5868 0.71 0.482001
Target:  5'- gCGCGCGGCGCaagauGGCcugUUUCCGGaUGGCc -3'
miRNA:   3'- -GCGCGCUGCGg----CUGa--AAAGGCC-GUUG- -5'
24012 3' -55.4 NC_005262.1 + 5888 0.66 0.767411
Target:  5'- aGCGauCGACGUCGAUg--UCgGGCGGg -3'
miRNA:   3'- gCGC--GCUGCGGCUGaaaAGgCCGUUg -5'
24012 3' -55.4 NC_005262.1 + 6405 0.74 0.327047
Target:  5'- gGCG-GGCGCCGACgagaggcggCCGGCGAg -3'
miRNA:   3'- gCGCgCUGCGGCUGaaaa-----GGCCGUUg -5'
24012 3' -55.4 NC_005262.1 + 6548 0.71 0.482001
Target:  5'- cCGCGuCGAUGCCGGCgucucgCCGG-AGCc -3'
miRNA:   3'- -GCGC-GCUGCGGCUGaaaa--GGCCgUUG- -5'
24012 3' -55.4 NC_005262.1 + 7142 0.68 0.608232
Target:  5'- gGUGCGACGCCaaacaGGCgaaacacCCGGCcGCa -3'
miRNA:   3'- gCGCGCUGCGG-----CUGaaaa---GGCCGuUG- -5'
24012 3' -55.4 NC_005262.1 + 7381 0.68 0.629914
Target:  5'- uCGCGCGAgaacgUGCCG-CUcgaaUCGGCGACa -3'
miRNA:   3'- -GCGCGCU-----GCGGCuGAaaa-GGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 7502 0.66 0.767411
Target:  5'- gGaCGUGACGCCGGaauccUUCGGCcGCu -3'
miRNA:   3'- gC-GCGCUGCGGCUgaaa-AGGCCGuUG- -5'
24012 3' -55.4 NC_005262.1 + 7635 0.67 0.694693
Target:  5'- gGC-CGaAUGUCGACg---CCGGCGGCg -3'
miRNA:   3'- gCGcGC-UGCGGCUGaaaaGGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 7719 0.67 0.694693
Target:  5'- cCGC-CGGCGUCGACa--UUCGGcCAACg -3'
miRNA:   3'- -GCGcGCUGCGGCUGaaaAGGCC-GUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.