miRNA display CGI


Results 21 - 40 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24012 3' -55.4 NC_005262.1 + 8289 0.67 0.694693
Target:  5'- cCGCGCGGaucauCGCugCGGCgccUUCCGGCGu- -3'
miRNA:   3'- -GCGCGCU-----GCG--GCUGaa-AAGGCCGUug -5'
24012 3' -55.4 NC_005262.1 + 9062 0.66 0.767411
Target:  5'- uGCGCGGgGuuGGCUggcUCCGGa--- -3'
miRNA:   3'- gCGCGCUgCggCUGAaa-AGGCCguug -5'
24012 3' -55.4 NC_005262.1 + 9310 0.66 0.767411
Target:  5'- aGCGUGGCGCCuggaACgaaaaUGGCGGCa -3'
miRNA:   3'- gCGCGCUGCGGc---UGaaaagGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 11075 0.66 0.767411
Target:  5'- cCGUGCGagcGCGaCCGGCguucCCGGCGc- -3'
miRNA:   3'- -GCGCGC---UGC-GGCUGaaaaGGCCGUug -5'
24012 3' -55.4 NC_005262.1 + 11488 0.67 0.694693
Target:  5'- gGCGCGGCG-CGGCU---UCGGCGu- -3'
miRNA:   3'- gCGCGCUGCgGCUGAaaaGGCCGUug -5'
24012 3' -55.4 NC_005262.1 + 11568 0.66 0.777346
Target:  5'- aCGCGCGcugcuAUGCCGGCgg---CGGcCAGCg -3'
miRNA:   3'- -GCGCGC-----UGCGGCUGaaaagGCC-GUUG- -5'
24012 3' -55.4 NC_005262.1 + 11636 0.68 0.662428
Target:  5'- gCGCGUGAUGC--ACUUcagCCGGCGAg -3'
miRNA:   3'- -GCGCGCUGCGgcUGAAaa-GGCCGUUg -5'
24012 3' -55.4 NC_005262.1 + 11646 0.68 0.615816
Target:  5'- uCG-GCGGCGCCGgcgucgcgcugcacGCUgg-CCGGCAGa -3'
miRNA:   3'- -GCgCGCUGCGGC--------------UGAaaaGGCCGUUg -5'
24012 3' -55.4 NC_005262.1 + 11730 0.77 0.198197
Target:  5'- aGCGCGACGCCGGCgccgCCGaGcCGAUg -3'
miRNA:   3'- gCGCGCUGCGGCUGaaaaGGC-C-GUUG- -5'
24012 3' -55.4 NC_005262.1 + 12279 0.69 0.554523
Target:  5'- uCGCGgcCGGCgaGCCGAgCUUUcUCGGCAACg -3'
miRNA:   3'- -GCGC--GCUG--CGGCU-GAAAaGGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 12524 0.71 0.462112
Target:  5'- cCGCGCGACGCgauCGcCUccaugUUgCGGCGGCa -3'
miRNA:   3'- -GCGCGCUGCG---GCuGAa----AAgGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 12561 0.66 0.757341
Target:  5'- uCGCgGCGGCGCuCGucgagcugcuGCUgccgCCGGCGAg -3'
miRNA:   3'- -GCG-CGCUGCG-GC----------UGAaaa-GGCCGUUg -5'
24012 3' -55.4 NC_005262.1 + 12659 0.67 0.683982
Target:  5'- gCGCGCGGCGCgCGGCgaacCCuGCGc- -3'
miRNA:   3'- -GCGCGCUGCG-GCUGaaaaGGcCGUug -5'
24012 3' -55.4 NC_005262.1 + 12672 0.7 0.4921
Target:  5'- -cCGCGACGCCu-Cg---CCGGCGGCa -3'
miRNA:   3'- gcGCGCUGCGGcuGaaaaGGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 12953 0.66 0.736838
Target:  5'- uGCGCGAcggcauCGCCGACcgc-UCGGCGu- -3'
miRNA:   3'- gCGCGCU------GCGGCUGaaaaGGCCGUug -5'
24012 3' -55.4 NC_005262.1 + 13066 0.69 0.57588
Target:  5'- aCGCGCGGgucgcgguCGUCGACgccgagCCGGuCGGCg -3'
miRNA:   3'- -GCGCGCU--------GCGGCUGaaaa--GGCC-GUUG- -5'
24012 3' -55.4 NC_005262.1 + 13557 0.66 0.767411
Target:  5'- gCGCGCGACGCgCGcggGCUUcgcgCCcuuGCGACc -3'
miRNA:   3'- -GCGCGCUGCG-GC---UGAAaa--GGc--CGUUG- -5'
24012 3' -55.4 NC_005262.1 + 14227 0.66 0.757341
Target:  5'- gGCGCGAUGUCGACcacgCaCGaGCAGg -3'
miRNA:   3'- gCGCGCUGCGGCUGaaaaG-GC-CGUUg -5'
24012 3' -55.4 NC_005262.1 + 14354 0.7 0.502295
Target:  5'- uCGCGCuuUGCC-ACUUccgucUCCGGCGACg -3'
miRNA:   3'- -GCGCGcuGCGGcUGAAa----AGGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 14359 0.68 0.629914
Target:  5'- uGCGCG-CGUCGACUgg--CGGCggUg -3'
miRNA:   3'- gCGCGCuGCGGCUGAaaagGCCGuuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.