miRNA display CGI


Results 41 - 60 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24012 3' -55.4 NC_005262.1 + 15248 0.72 0.432167
Target:  5'- uGCGUGccguccaacauccGCGCCGACUcgacgCCGGCcGCg -3'
miRNA:   3'- gCGCGC-------------UGCGGCUGAaaa--GGCCGuUG- -5'
24012 3' -55.4 NC_005262.1 + 15379 0.74 0.328622
Target:  5'- uGCGCGGCGaauCGACga--CUGGCAGCa -3'
miRNA:   3'- gCGCGCUGCg--GCUGaaaaGGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 15496 0.68 0.651604
Target:  5'- aGCGCGGCgGCUcGCUca-CCGGCGAg -3'
miRNA:   3'- gCGCGCUG-CGGcUGAaaaGGCCGUUg -5'
24012 3' -55.4 NC_005262.1 + 16005 0.66 0.732686
Target:  5'- aGCGCGGCaCCGACgacgagcaGGCGAUc -3'
miRNA:   3'- gCGCGCUGcGGCUGaaaagg--CCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 16355 0.73 0.361292
Target:  5'- gCGCGCugaucGGCGCCGcCgcgUUCGGCAACc -3'
miRNA:   3'- -GCGCG-----CUGCGGCuGaaaAGGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 16441 0.66 0.736838
Target:  5'- aCGCgGCGGCGCCGAUcagcgcgCCGagccagaggaucGCGGCg -3'
miRNA:   3'- -GCG-CGCUGCGGCUGaaaa---GGC------------CGUUG- -5'
24012 3' -55.4 NC_005262.1 + 16574 0.73 0.352916
Target:  5'- aGCGCcuCGCCcaGCUcgUCCGGCAGCg -3'
miRNA:   3'- gCGCGcuGCGGc-UGAaaAGGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 17078 0.68 0.640763
Target:  5'- aGCGCG-CGCuCGGCcgg--CGGCAGCa -3'
miRNA:   3'- gCGCGCuGCG-GCUGaaaagGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 17247 0.66 0.736838
Target:  5'- gCGCGCGGCcuuGCCGGCc-UUCuCGauuGCGACg -3'
miRNA:   3'- -GCGCGCUG---CGGCUGaaAAG-GC---CGUUG- -5'
24012 3' -55.4 NC_005262.1 + 17491 0.72 0.423687
Target:  5'- gCGCGCGccGCGCgCGACgcgUCgauCGGCAGCc -3'
miRNA:   3'- -GCGCGC--UGCG-GCUGaaaAG---GCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 17495 0.67 0.705344
Target:  5'- aGCGUGGCGCCcaGCg--UCuCGGCAu- -3'
miRNA:   3'- gCGCGCUGCGGc-UGaaaAG-GCCGUug -5'
24012 3' -55.4 NC_005262.1 + 17568 0.68 0.651604
Target:  5'- gCGCGCGGCGCgCG-CUUcgUCCuggaacucGGCGAa -3'
miRNA:   3'- -GCGCGCUGCG-GCuGAAa-AGG--------CCGUUg -5'
24012 3' -55.4 NC_005262.1 + 17575 0.72 0.387239
Target:  5'- gCGCGCGAaGCCGAggagaagCUGGCGGCg -3'
miRNA:   3'- -GCGCGCUgCGGCUgaaaa--GGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 17645 0.66 0.777346
Target:  5'- nCGCGCGcCGCCGcgGCUg--CCGccucgcgcGCGACc -3'
miRNA:   3'- -GCGCGCuGCGGC--UGAaaaGGC--------CGUUG- -5'
24012 3' -55.4 NC_005262.1 + 17677 0.68 0.651604
Target:  5'- cCGCGCGcuGCGCCGccaGCUUcUCCucGGCuuCg -3'
miRNA:   3'- -GCGCGC--UGCGGC---UGAAaAGG--CCGuuG- -5'
24012 3' -55.4 NC_005262.1 + 17920 0.69 0.58663
Target:  5'- cCGCcgauCGGCGCCGACgccaaCGGCGAg -3'
miRNA:   3'- -GCGc---GCUGCGGCUGaaaagGCCGUUg -5'
24012 3' -55.4 NC_005262.1 + 18002 0.71 0.462112
Target:  5'- gGCGuCGGCGCCGA-----UCGGCGGCu -3'
miRNA:   3'- gCGC-GCUGCGGCUgaaaaGGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 20586 0.66 0.736838
Target:  5'- aGCGCcGCGCCGAUgg-UgCGcGCGAUu -3'
miRNA:   3'- gCGCGcUGCGGCUGaaaAgGC-CGUUG- -5'
24012 3' -55.4 NC_005262.1 + 21632 0.66 0.747146
Target:  5'- aGUGCGACGgCGACggcgaCGGCc-- -3'
miRNA:   3'- gCGCGCUGCgGCUGaaaagGCCGuug -5'
24012 3' -55.4 NC_005262.1 + 21764 0.67 0.673224
Target:  5'- aGCGCGGCGCCGcCgc-UCaGGUuGCg -3'
miRNA:   3'- gCGCGCUGCGGCuGaaaAGgCCGuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.