miRNA display CGI


Results 61 - 80 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24012 3' -55.4 NC_005262.1 + 21873 0.67 0.705344
Target:  5'- gGCGCuGAaGCCGACcgcgcagCCGGaCGACg -3'
miRNA:   3'- gCGCG-CUgCGGCUGaaaa---GGCC-GUUG- -5'
24012 3' -55.4 NC_005262.1 + 22122 0.67 0.694693
Target:  5'- uGCaCGugGCCGGCaaucgUCUGGCcGCc -3'
miRNA:   3'- gCGcGCugCGGCUGaaa--AGGCCGuUG- -5'
24012 3' -55.4 NC_005262.1 + 22219 0.66 0.747146
Target:  5'- aGcCGCGGCgGCCaGACgauugCCGGCcACg -3'
miRNA:   3'- gC-GCGCUG-CGG-CUGaaaa-GGCCGuUG- -5'
24012 3' -55.4 NC_005262.1 + 22422 0.67 0.673224
Target:  5'- aGCGC--CGCCuGCUcg-CCGGCAACc -3'
miRNA:   3'- gCGCGcuGCGGcUGAaaaGGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 22926 0.67 0.683982
Target:  5'- aCGCGCu-CGCCGACgccaugcUCCGcGCGGg -3'
miRNA:   3'- -GCGCGcuGCGGCUGaaa----AGGC-CGUUg -5'
24012 3' -55.4 NC_005262.1 + 22965 0.69 0.597417
Target:  5'- uCGUGCucUGCCGGCUcgaagUCCgaGGCAACg -3'
miRNA:   3'- -GCGCGcuGCGGCUGAaa---AGG--CCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 23368 0.7 0.543931
Target:  5'- gCGCGCGGCGgCGAagg--CCcGCAACg -3'
miRNA:   3'- -GCGCGCUGCgGCUgaaaaGGcCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 23399 0.67 0.673224
Target:  5'- uGCGCGGCGCCuugaugcGCUUga-UGGCGAa -3'
miRNA:   3'- gCGCGCUGCGGc------UGAAaagGCCGUUg -5'
24012 3' -55.4 NC_005262.1 + 23794 0.69 0.565175
Target:  5'- uCGcCGCGugGUCGACcgUgcgCCGGUAGa -3'
miRNA:   3'- -GC-GCGCugCGGCUGaaAa--GGCCGUUg -5'
24012 3' -55.4 NC_005262.1 + 24212 0.68 0.640763
Target:  5'- aGcCGCGACGCUG-Cg---CCGGCAc- -3'
miRNA:   3'- gC-GCGCUGCGGCuGaaaaGGCCGUug -5'
24012 3' -55.4 NC_005262.1 + 24557 0.71 0.462112
Target:  5'- aGCGCGACGCuCGug----CCGuGCAGCg -3'
miRNA:   3'- gCGCGCUGCG-GCugaaaaGGC-CGUUG- -5'
24012 3' -55.4 NC_005262.1 + 24957 0.67 0.677533
Target:  5'- gGCGCGcccagcuucaggaacAgGCCGGCUUggUCgaGGCGGCa -3'
miRNA:   3'- gCGCGC---------------UgCGGCUGAAa-AGg-CCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 25246 0.73 0.376714
Target:  5'- cCGCGCGcaACGCCGGCUccugcgccgccUCUGGCAccGCa -3'
miRNA:   3'- -GCGCGC--UGCGGCUGAaa---------AGGCCGU--UG- -5'
24012 3' -55.4 NC_005262.1 + 25934 1.02 0.003656
Target:  5'- aCGCGCGACGCCGAC-UUUCCGGCAACg -3'
miRNA:   3'- -GCGCGCUGCGGCUGaAAAGGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 26413 0.68 0.662428
Target:  5'- aCGCGCGACGCguucccGCUgcUCUGGUucGACg -3'
miRNA:   3'- -GCGCGCUGCGgc----UGAaaAGGCCG--UUG- -5'
24012 3' -55.4 NC_005262.1 + 27460 0.66 0.736838
Target:  5'- uCGCGgaGGCGCCGACga---CGGCcuCg -3'
miRNA:   3'- -GCGCg-CUGCGGCUGaaaagGCCGuuG- -5'
24012 3' -55.4 NC_005262.1 + 28162 0.72 0.405205
Target:  5'- gCGCGCGGCGCa-ACUgcgCgCGGCGGCc -3'
miRNA:   3'- -GCGCGCUGCGgcUGAaaaG-GCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 28884 0.66 0.745094
Target:  5'- uGCuGgGACGCaCGACgaacgcagugUCCGGCGucGCg -3'
miRNA:   3'- gCG-CgCUGCG-GCUGaaa-------AGGCCGU--UG- -5'
24012 3' -55.4 NC_005262.1 + 29884 0.76 0.243967
Target:  5'- gCGCGCGGCGCUucaggaagauGACggUUCgGGCGAUg -3'
miRNA:   3'- -GCGCGCUGCGG----------CUGaaAAGgCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 30069 0.68 0.619068
Target:  5'- uGCcgGCGACGaCGACg---CCGGCAAg -3'
miRNA:   3'- gCG--CGCUGCgGCUGaaaaGGCCGUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.