miRNA display CGI


Results 1 - 20 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24012 3' -55.4 NC_005262.1 + 63760 0.68 0.629914
Target:  5'- uGCGuCGuCGCCGuCg---CCGGCAAUu -3'
miRNA:   3'- gCGC-GCuGCGGCuGaaaaGGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 63656 0.68 0.640763
Target:  5'- gCGgGCGAa-CUGGCUggaauugCCGGCGACg -3'
miRNA:   3'- -GCgCGCUgcGGCUGAaaa----GGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 63553 0.68 0.60715
Target:  5'- cCGCGCGAaauguccCGCCGcCg---CCGGCggUa -3'
miRNA:   3'- -GCGCGCU-------GCGGCuGaaaaGGCCGuuG- -5'
24012 3' -55.4 NC_005262.1 + 63394 0.67 0.673224
Target:  5'- gCGCGCGuguuccACGUCGACgccgagCCaGCAGCc -3'
miRNA:   3'- -GCGCGC------UGCGGCUGaaaa--GGcCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 62954 0.68 0.608232
Target:  5'- uGCGCG-CGUCG-CU--UCCGGcCGACa -3'
miRNA:   3'- gCGCGCuGCGGCuGAaaAGGCC-GUUG- -5'
24012 3' -55.4 NC_005262.1 + 62898 0.66 0.736838
Target:  5'- cCGCcaGCG-CGCCGACgag-CUGGCGcGCa -3'
miRNA:   3'- -GCG--CGCuGCGGCUGaaaaGGCCGU-UG- -5'
24012 3' -55.4 NC_005262.1 + 61586 0.66 0.767411
Target:  5'- aGCGaGAUcauuuCCGACUgUUCCGGCcGCg -3'
miRNA:   3'- gCGCgCUGc----GGCUGAaAAGGCCGuUG- -5'
24012 3' -55.4 NC_005262.1 + 61157 0.67 0.673224
Target:  5'- uGCGCcuuCGUCGACggcguaUCCGGCAc- -3'
miRNA:   3'- gCGCGcu-GCGGCUGaaa---AGGCCGUug -5'
24012 3' -55.4 NC_005262.1 + 60560 0.66 0.777346
Target:  5'- aCGC-UGACGCCGGCgc--UCGGCGc- -3'
miRNA:   3'- -GCGcGCUGCGGCUGaaaaGGCCGUug -5'
24012 3' -55.4 NC_005262.1 + 60494 0.66 0.777346
Target:  5'- gGCGaGACGCCGGg----CCGcGCGGCg -3'
miRNA:   3'- gCGCgCUGCGGCUgaaaaGGC-CGUUG- -5'
24012 3' -55.4 NC_005262.1 + 60486 0.73 0.366384
Target:  5'- aCGUGCGccaugcCGCCGACgaucuugcggCCGGCGACc -3'
miRNA:   3'- -GCGCGCu-----GCGGCUGaaaa------GGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 59461 0.66 0.726428
Target:  5'- uGCGCGAgCGCCuggagcucGGCguugCCGGCGuACu -3'
miRNA:   3'- gCGCGCU-GCGG--------CUGaaaaGGCCGU-UG- -5'
24012 3' -55.4 NC_005262.1 + 59225 0.66 0.747146
Target:  5'- gCGCGCGGCGaCgCGGCccggCCGGUucGCc -3'
miRNA:   3'- -GCGCGCUGC-G-GCUGaaaaGGCCGu-UG- -5'
24012 3' -55.4 NC_005262.1 + 59059 0.7 0.4921
Target:  5'- gGCGUGAggcCGCCGGCgg--CCGGCu-- -3'
miRNA:   3'- gCGCGCU---GCGGCUGaaaaGGCCGuug -5'
24012 3' -55.4 NC_005262.1 + 58954 0.67 0.672146
Target:  5'- gCGCGCagcagucGAaccaGCCGGCcg--CCGGCGGCc -3'
miRNA:   3'- -GCGCG-------CUg---CGGCUGaaaaGGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 58883 0.67 0.683982
Target:  5'- cCGCGCGuuggcugcugccGCGCUGcGCgaucaggCCGGCGGCc -3'
miRNA:   3'- -GCGCGC------------UGCGGC-UGaaaa---GGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 58463 0.68 0.619068
Target:  5'- uGCGCGGCGUcaCGACg---UCGGaCGGCa -3'
miRNA:   3'- gCGCGCUGCG--GCUGaaaaGGCC-GUUG- -5'
24012 3' -55.4 NC_005262.1 + 58293 0.72 0.423687
Target:  5'- aCGgGCGGCGCCG-CUc-UCCgcaGGCGACg -3'
miRNA:   3'- -GCgCGCUGCGGCuGAaaAGG---CCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 58166 0.72 0.433115
Target:  5'- uGCGUaGCGUCG---UUUCCGGCAACa -3'
miRNA:   3'- gCGCGcUGCGGCugaAAAGGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 57642 0.68 0.640763
Target:  5'- uGCGCGuCGagaaCGACUcgaUCGGCGGCa -3'
miRNA:   3'- gCGCGCuGCg---GCUGAaaaGGCCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.