miRNA display CGI


Results 21 - 40 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24012 3' -55.4 NC_005262.1 + 57591 0.73 0.361292
Target:  5'- gGCGCGACGCUGAac--UUCGGCGc- -3'
miRNA:   3'- gCGCGCUGCGGCUgaaaAGGCCGUug -5'
24012 3' -55.4 NC_005262.1 + 57302 0.7 0.4921
Target:  5'- gCGuCGCGAUGCCGcCga--CCGGCAGg -3'
miRNA:   3'- -GC-GCGCUGCGGCuGaaaaGGCCGUUg -5'
24012 3' -55.4 NC_005262.1 + 56943 0.66 0.767411
Target:  5'- aGCGC-ACGCCGAUccgcgCgGGCGAg -3'
miRNA:   3'- gCGCGcUGCGGCUGaaaa-GgCCGUUg -5'
24012 3' -55.4 NC_005262.1 + 56882 0.68 0.619068
Target:  5'- cCGCuCGACGUCGGCcuucaggCCGGcCAGCu -3'
miRNA:   3'- -GCGcGCUGCGGCUGaaaa---GGCC-GUUG- -5'
24012 3' -55.4 NC_005262.1 + 56750 0.69 0.58663
Target:  5'- gGcCGCcGCGCUGGCg--UCgGGCGACg -3'
miRNA:   3'- gC-GCGcUGCGGCUGaaaAGgCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 56606 0.7 0.522954
Target:  5'- cCGCGCGugGgCGACgaag--GGCAGCu -3'
miRNA:   3'- -GCGCGCugCgGCUGaaaaggCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 56176 0.66 0.757341
Target:  5'- aCGcCGUGAuCGCCGACUaccaUgCGGCAu- -3'
miRNA:   3'- -GC-GCGCU-GCGGCUGAaa--AgGCCGUug -5'
24012 3' -55.4 NC_005262.1 + 55915 0.75 0.276827
Target:  5'- uCGCGCaGuACGUCGACcg-UCCGGCGAUc -3'
miRNA:   3'- -GCGCG-C-UGCGGCUGaaaAGGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 55714 0.69 0.597417
Target:  5'- gCGCGCGGC-CCGGCUUcuugCUGcGCAGg -3'
miRNA:   3'- -GCGCGCUGcGGCUGAAaa--GGC-CGUUg -5'
24012 3' -55.4 NC_005262.1 + 55646 0.71 0.482001
Target:  5'- gCGCGCucGugGCCG-Cg--UCCGGCAc- -3'
miRNA:   3'- -GCGCG--CugCGGCuGaaaAGGCCGUug -5'
24012 3' -55.4 NC_005262.1 + 54441 0.66 0.736838
Target:  5'- cCGCGCG-CGCCGACcggaaguaUCaGcGCAACg -3'
miRNA:   3'- -GCGCGCuGCGGCUGaaa-----AGgC-CGUUG- -5'
24012 3' -55.4 NC_005262.1 + 54405 0.67 0.683982
Target:  5'- aGCGCGuCGauGACg--UCCuGGCGGCu -3'
miRNA:   3'- gCGCGCuGCggCUGaaaAGG-CCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 53772 0.68 0.608232
Target:  5'- gGCGgGcuguACGUCGGCgauaCCGGCAACc -3'
miRNA:   3'- gCGCgC----UGCGGCUGaaaaGGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 53571 0.71 0.462112
Target:  5'- gGCGCGcacGCGCUGA-----CCGGCAGCa -3'
miRNA:   3'- gCGCGC---UGCGGCUgaaaaGGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 53452 0.78 0.173544
Target:  5'- aGCGCGGCGCCGGCg--UCgaGGaCAACg -3'
miRNA:   3'- gCGCGCUGCGGCUGaaaAGg-CC-GUUG- -5'
24012 3' -55.4 NC_005262.1 + 52938 0.7 0.4921
Target:  5'- gGCcuGCGcCGCCugGGCUUcgCCGGCGGCa -3'
miRNA:   3'- gCG--CGCuGCGG--CUGAAaaGGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 52796 0.74 0.328622
Target:  5'- aGCGCGGCcucguCCGGCgucggCCGGCGGCc -3'
miRNA:   3'- gCGCGCUGc----GGCUGaaaa-GGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 52611 0.68 0.661347
Target:  5'- aGCGCGAUcuccucgGCCGACU--UCuCGGCcAUg -3'
miRNA:   3'- gCGCGCUG-------CGGCUGAaaAG-GCCGuUG- -5'
24012 3' -55.4 NC_005262.1 + 51965 0.66 0.736838
Target:  5'- gCGCGCGccuGCGCuCGAaacugUCCGGUucGCa -3'
miRNA:   3'- -GCGCGC---UGCG-GCUgaaa-AGGCCGu-UG- -5'
24012 3' -55.4 NC_005262.1 + 51891 0.67 0.704282
Target:  5'- aGC-CGAgcCGCCGaacggcaccgaccGCUUcgCCGGCAACa -3'
miRNA:   3'- gCGcGCU--GCGGC-------------UGAAaaGGCCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.