miRNA display CGI


Results 41 - 60 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24012 3' -55.4 NC_005262.1 + 51465 0.7 0.4921
Target:  5'- gGCGCGGCcuugGCCGGCg--UCgCGGaCGGCg -3'
miRNA:   3'- gCGCGCUG----CGGCUGaaaAG-GCC-GUUG- -5'
24012 3' -55.4 NC_005262.1 + 51378 0.67 0.683982
Target:  5'- -cCGCGACGCCGGCcaaggCCGcGCcuGACc -3'
miRNA:   3'- gcGCGCUGCGGCUGaaaa-GGC-CG--UUG- -5'
24012 3' -55.4 NC_005262.1 + 51368 0.66 0.726428
Target:  5'- uGCGCaGCaGCCGGCgg--CCGGUGAg -3'
miRNA:   3'- gCGCGcUG-CGGCUGaaaaGGCCGUUg -5'
24012 3' -55.4 NC_005262.1 + 51240 0.66 0.747146
Target:  5'- uGCGCGcuCGgCGACUUcUUCaCGGCGu- -3'
miRNA:   3'- gCGCGCu-GCgGCUGAA-AAG-GCCGUug -5'
24012 3' -55.4 NC_005262.1 + 51171 0.67 0.715926
Target:  5'- gCGCGCagcaGGCaGCCGACgacg-CGGCGGCc -3'
miRNA:   3'- -GCGCG----CUG-CGGCUGaaaagGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 50920 0.66 0.777346
Target:  5'- gCGCGgGAUGCCaGCgugcccgucUCCGGCGc- -3'
miRNA:   3'- -GCGCgCUGCGGcUGaaa------AGGCCGUug -5'
24012 3' -55.4 NC_005262.1 + 50719 0.7 0.4921
Target:  5'- uGCuCGGCGgCGACaUUUCCaGCAACa -3'
miRNA:   3'- gCGcGCUGCgGCUGaAAAGGcCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 50407 0.7 0.533405
Target:  5'- uGCGCGGCgggcgcugcgGCCGGCUccucaaUCCGcGCGGCc -3'
miRNA:   3'- gCGCGCUG----------CGGCUGAaa----AGGC-CGUUG- -5'
24012 3' -55.4 NC_005262.1 + 50274 0.66 0.726428
Target:  5'- gGCGCGcccGCGCCGGCcgagCCcGUGACg -3'
miRNA:   3'- gCGCGC---UGCGGCUGaaaaGGcCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 50176 0.68 0.629914
Target:  5'- uCGCGCGGCGCgGGuucggUCgGcGCAGCg -3'
miRNA:   3'- -GCGCGCUGCGgCUgaaa-AGgC-CGUUG- -5'
24012 3' -55.4 NC_005262.1 + 50060 0.66 0.767411
Target:  5'- aGCG-GGCGCCG-CUgucucgUCGGCGAUc -3'
miRNA:   3'- gCGCgCUGCGGCuGAaaa---GGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 50041 0.67 0.708527
Target:  5'- aGC-CGGCGCCGGCUgcucccgagacgaagCCGGaGACg -3'
miRNA:   3'- gCGcGCUGCGGCUGAaaa------------GGCCgUUG- -5'
24012 3' -55.4 NC_005262.1 + 49897 0.66 0.750217
Target:  5'- uCGCGCGGCcgaucggGCCgGACggugcaggggcgUCCGGCGcgGCa -3'
miRNA:   3'- -GCGCGCUG-------CGG-CUGaaa---------AGGCCGU--UG- -5'
24012 3' -55.4 NC_005262.1 + 49839 0.69 0.58663
Target:  5'- gCGCGCGAaugGCCcGgUg--CCGGCGGCg -3'
miRNA:   3'- -GCGCGCUg--CGGcUgAaaaGGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 49835 0.69 0.57588
Target:  5'- gGCGCGGgcgcCGCCGGCg--UCgGuGCGGCu -3'
miRNA:   3'- gCGCGCU----GCGGCUGaaaAGgC-CGUUG- -5'
24012 3' -55.4 NC_005262.1 + 49753 0.66 0.726428
Target:  5'- aCGCcgGCGGCGCCcGCgcccgaggcUCCGGCcGCu -3'
miRNA:   3'- -GCG--CGCUGCGGcUGaaa------AGGCCGuUG- -5'
24012 3' -55.4 NC_005262.1 + 49707 0.67 0.673224
Target:  5'- cCGCGaCGGCGUgccgggCGGCgaa-CCGGCGGCc -3'
miRNA:   3'- -GCGC-GCUGCG------GCUGaaaaGGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 49448 0.68 0.640763
Target:  5'- gCGCGCGuCGCCGAgUcgUCagcgaGcGCGGCg -3'
miRNA:   3'- -GCGCGCuGCGGCUgAaaAGg----C-CGUUG- -5'
24012 3' -55.4 NC_005262.1 + 49394 0.67 0.673224
Target:  5'- cCGCG-GGCGUCGcaACUggucugUUCGGCGGCa -3'
miRNA:   3'- -GCGCgCUGCGGC--UGAaa----AGGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 49348 0.71 0.442664
Target:  5'- gCGCGCGccgcgcuCGCUGACgac-UCGGCGACg -3'
miRNA:   3'- -GCGCGCu------GCGGCUGaaaaGGCCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.