miRNA display CGI


Results 1 - 20 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24012 3' -55.4 NC_005262.1 + 12524 0.71 0.462112
Target:  5'- cCGCGCGACGCgauCGcCUccaugUUgCGGCGGCa -3'
miRNA:   3'- -GCGCGCUGCG---GCuGAa----AAgGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 31628 0.72 0.396156
Target:  5'- uGCGCGGCaaGCCGACcua--CGGCGAUg -3'
miRNA:   3'- gCGCGCUG--CGGCUGaaaagGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 4831 0.72 0.396156
Target:  5'- gGCGCGACGCaguGCcUUUCCGGUGGa -3'
miRNA:   3'- gCGCGCUGCGgc-UGaAAAGGCCGUUg -5'
24012 3' -55.4 NC_005262.1 + 28162 0.72 0.405205
Target:  5'- gCGCGCGGCGCa-ACUgcgCgCGGCGGCc -3'
miRNA:   3'- -GCGCGCUGCGgcUGAaaaG-GCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 40355 0.72 0.414382
Target:  5'- gCGCGCuGAUGUCGAUcg--UCGGCGACg -3'
miRNA:   3'- -GCGCG-CUGCGGCUGaaaaGGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 17491 0.72 0.423687
Target:  5'- gCGCGCGccGCGCgCGACgcgUCgauCGGCAGCc -3'
miRNA:   3'- -GCGCGC--UGCG-GCUGaaaAG---GCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 49348 0.71 0.442664
Target:  5'- gCGCGCGccgcgcuCGCUGACgac-UCGGCGACg -3'
miRNA:   3'- -GCGCGCu------GCGGCUGaaaaGGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 32922 0.71 0.459167
Target:  5'- aCGCGCGACGCucccagcgccuucaCGAUcgcuccgaCCGGCAACc -3'
miRNA:   3'- -GCGCGCUGCG--------------GCUGaaaa----GGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 53571 0.71 0.462112
Target:  5'- gGCGCGcacGCGCUGA-----CCGGCAGCa -3'
miRNA:   3'- gCGCGC---UGCGGCUgaaaaGGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 765 0.72 0.395258
Target:  5'- aCGCGCucguCGCCGagguucgggcgugGCUUgaCCGGCAGCa -3'
miRNA:   3'- -GCGCGcu--GCGGC-------------UGAAaaGGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 17575 0.72 0.387239
Target:  5'- gCGCGCGAaGCCGAggagaagCUGGCGGCg -3'
miRNA:   3'- -GCGCGCUgCGGCUgaaaa--GGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 25246 0.73 0.376714
Target:  5'- cCGCGCGcaACGCCGGCUccugcgccgccUCUGGCAccGCa -3'
miRNA:   3'- -GCGCGC--UGCGGCUGAaa---------AGGCCGU--UG- -5'
24012 3' -55.4 NC_005262.1 + 46542 0.79 0.147597
Target:  5'- aGCGCGGCGCCGGCcgccgcUCCcGCGACg -3'
miRNA:   3'- gCGCGCUGCGGCUGaaa---AGGcCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 32810 0.79 0.160097
Target:  5'- uCGCGUucGACGUCGGCcucaugUCCGGCGACg -3'
miRNA:   3'- -GCGCG--CUGCGGCUGaaa---AGGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 53452 0.78 0.173544
Target:  5'- aGCGCGGCGCCGGCg--UCgaGGaCAACg -3'
miRNA:   3'- gCGCGCUGCGGCUGaaaAGg-CC-GUUG- -5'
24012 3' -55.4 NC_005262.1 + 29884 0.76 0.243967
Target:  5'- gCGCGCGGCGCUucaggaagauGACggUUCgGGCGAUg -3'
miRNA:   3'- -GCGCGCUGCGG----------CUGaaAAGgCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 55915 0.75 0.276827
Target:  5'- uCGCGCaGuACGUCGACcg-UCCGGCGAUc -3'
miRNA:   3'- -GCGCG-C-UGCGGCUGaaaAGGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 32888 0.74 0.305586
Target:  5'- cCGCGuCGaACGUCGGCcaagCCGGCGGCg -3'
miRNA:   3'- -GCGC-GC-UGCGGCUGaaaaGGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 2658 0.74 0.320803
Target:  5'- uGCGCGGCGCCGgGCggcgUCCuGGCcGCc -3'
miRNA:   3'- gCGCGCUGCGGC-UGaaa-AGG-CCGuUG- -5'
24012 3' -55.4 NC_005262.1 + 16355 0.73 0.361292
Target:  5'- gCGCGCugaucGGCGCCGcCgcgUUCGGCAACc -3'
miRNA:   3'- -GCGCG-----CUGCGGCuGaaaAGGCCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.