Results 41 - 60 of 206 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24012 | 3' | -55.4 | NC_005262.1 | + | 55915 | 0.75 | 0.276827 |
Target: 5'- uCGCGCaGuACGUCGACcg-UCCGGCGAUc -3' miRNA: 3'- -GCGCG-C-UGCGGCUGaaaAGGCCGUUG- -5' |
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24012 | 3' | -55.4 | NC_005262.1 | + | 29884 | 0.76 | 0.243967 |
Target: 5'- gCGCGCGGCGCUucaggaagauGACggUUCgGGCGAUg -3' miRNA: 3'- -GCGCGCUGCGG----------CUGaaAAGgCCGUUG- -5' |
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24012 | 3' | -55.4 | NC_005262.1 | + | 53452 | 0.78 | 0.173544 |
Target: 5'- aGCGCGGCGCCGGCg--UCgaGGaCAACg -3' miRNA: 3'- gCGCGCUGCGGCUGaaaAGg-CC-GUUG- -5' |
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24012 | 3' | -55.4 | NC_005262.1 | + | 32810 | 0.79 | 0.160097 |
Target: 5'- uCGCGUucGACGUCGGCcucaugUCCGGCGACg -3' miRNA: 3'- -GCGCG--CUGCGGCUGaaa---AGGCCGUUG- -5' |
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24012 | 3' | -55.4 | NC_005262.1 | + | 46542 | 0.79 | 0.147597 |
Target: 5'- aGCGCGGCGCCGGCcgccgcUCCcGCGACg -3' miRNA: 3'- gCGCGCUGCGGCUGaaa---AGGcCGUUG- -5' |
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24012 | 3' | -55.4 | NC_005262.1 | + | 28162 | 0.72 | 0.405205 |
Target: 5'- gCGCGCGGCGCa-ACUgcgCgCGGCGGCc -3' miRNA: 3'- -GCGCGCUGCGgcUGAaaaG-GCCGUUG- -5' |
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24012 | 3' | -55.4 | NC_005262.1 | + | 40355 | 0.72 | 0.414382 |
Target: 5'- gCGCGCuGAUGUCGAUcg--UCGGCGACg -3' miRNA: 3'- -GCGCG-CUGCGGCUGaaaaGGCCGUUG- -5' |
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24012 | 3' | -55.4 | NC_005262.1 | + | 56606 | 0.7 | 0.522954 |
Target: 5'- cCGCGCGugGgCGACgaag--GGCAGCu -3' miRNA: 3'- -GCGCGCugCgGCUGaaaaggCCGUUG- -5' |
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24012 | 3' | -55.4 | NC_005262.1 | + | 45920 | 0.7 | 0.522954 |
Target: 5'- uGCGCG-CGCCGAUcaagUCgGGCuACg -3' miRNA: 3'- gCGCGCuGCGGCUGaaa-AGgCCGuUG- -5' |
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24012 | 3' | -55.4 | NC_005262.1 | + | 30613 | 0.7 | 0.512581 |
Target: 5'- gGCGCGAagaucgagccgcCGCCGACgc--UCGGCAAg -3' miRNA: 3'- gCGCGCU------------GCGGCUGaaaaGGCCGUUg -5' |
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24012 | 3' | -55.4 | NC_005262.1 | + | 49185 | 0.7 | 0.4921 |
Target: 5'- gGCGCGcACGgCGAUgaucUCCGGCAu- -3' miRNA: 3'- gCGCGC-UGCgGCUGaaa-AGGCCGUug -5' |
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24012 | 3' | -55.4 | NC_005262.1 | + | 52938 | 0.7 | 0.4921 |
Target: 5'- gGCcuGCGcCGCCugGGCUUcgCCGGCGGCa -3' miRNA: 3'- gCG--CGCuGCGG--CUGAAaaGGCCGUUG- -5' |
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24012 | 3' | -55.4 | NC_005262.1 | + | 55646 | 0.71 | 0.482001 |
Target: 5'- gCGCGCucGugGCCG-Cg--UCCGGCAc- -3' miRNA: 3'- -GCGCG--CugCGGCuGaaaAGGCCGUug -5' |
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24012 | 3' | -55.4 | NC_005262.1 | + | 45765 | 0.71 | 0.482001 |
Target: 5'- -aCGCGACGCCGAUcggcaUCgCGGCGAa -3' miRNA: 3'- gcGCGCUGCGGCUGaaa--AG-GCCGUUg -5' |
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24012 | 3' | -55.4 | NC_005262.1 | + | 47921 | 0.71 | 0.472004 |
Target: 5'- -uUGCaGACGCCGAgCg---CCGGCGACa -3' miRNA: 3'- gcGCG-CUGCGGCU-GaaaaGGCCGUUG- -5' |
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24012 | 3' | -55.4 | NC_005262.1 | + | 12524 | 0.71 | 0.462112 |
Target: 5'- cCGCGCGACGCgauCGcCUccaugUUgCGGCGGCa -3' miRNA: 3'- -GCGCGCUGCG---GCuGAa----AAgGCCGUUG- -5' |
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24012 | 3' | -55.4 | NC_005262.1 | + | 53571 | 0.71 | 0.462112 |
Target: 5'- gGCGCGcacGCGCUGA-----CCGGCAGCa -3' miRNA: 3'- gCGCGC---UGCGGCUgaaaaGGCCGUUG- -5' |
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24012 | 3' | -55.4 | NC_005262.1 | + | 32922 | 0.71 | 0.459167 |
Target: 5'- aCGCGCGACGCucccagcgccuucaCGAUcgcuccgaCCGGCAACc -3' miRNA: 3'- -GCGCGCUGCG--------------GCUGaaaa----GGCCGUUG- -5' |
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24012 | 3' | -55.4 | NC_005262.1 | + | 49348 | 0.71 | 0.442664 |
Target: 5'- gCGCGCGccgcgcuCGCUGACgac-UCGGCGACg -3' miRNA: 3'- -GCGCGCu------GCGGCUGaaaaGGCCGUUG- -5' |
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24012 | 3' | -55.4 | NC_005262.1 | + | 17491 | 0.72 | 0.423687 |
Target: 5'- gCGCGCGccGCGCgCGACgcgUCgauCGGCAGCc -3' miRNA: 3'- -GCGCGC--UGCG-GCUGaaaAG---GCCGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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