miRNA display CGI


Results 61 - 80 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24012 3' -55.4 NC_005262.1 + 53571 0.71 0.462112
Target:  5'- gGCGCGcacGCGCUGA-----CCGGCAGCa -3'
miRNA:   3'- gCGCGC---UGCGGCUgaaaaGGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 12524 0.71 0.462112
Target:  5'- cCGCGCGACGCgauCGcCUccaugUUgCGGCGGCa -3'
miRNA:   3'- -GCGCGCUGCG---GCuGAa----AAgGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 12279 0.69 0.554523
Target:  5'- uCGCGgcCGGCgaGCCGAgCUUUcUCGGCAACg -3'
miRNA:   3'- -GCGC--GCUG--CGGCU-GAAAaGGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 47484 0.69 0.565175
Target:  5'- aCGCGCugaagaACGCCGGCUacUCCGaCGACu -3'
miRNA:   3'- -GCGCGc-----UGCGGCUGAaaAGGCcGUUG- -5'
24012 3' -55.4 NC_005262.1 + 49839 0.69 0.58663
Target:  5'- gCGCGCGAaugGCCcGgUg--CCGGCGGCg -3'
miRNA:   3'- -GCGCGCUg--CGGcUgAaaaGGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 56750 0.69 0.58663
Target:  5'- gGcCGCcGCGCUGGCg--UCgGGCGACg -3'
miRNA:   3'- gC-GCGcUGCGGCUGaaaAGgCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 17920 0.69 0.58663
Target:  5'- cCGCcgauCGGCGCCGACgccaaCGGCGAg -3'
miRNA:   3'- -GCGc---GCUGCGGCUGaaaagGCCGUUg -5'
24012 3' -55.4 NC_005262.1 + 32766 0.69 0.593098
Target:  5'- gGUGCuGAuCGCCGACaagcucgacaCCGGCGGCg -3'
miRNA:   3'- gCGCG-CU-GCGGCUGaaaa------GGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 40403 0.69 0.597417
Target:  5'- uCGCGCGGauucaGCCGcGCg---UCGGCGACc -3'
miRNA:   3'- -GCGCGCUg----CGGC-UGaaaaGGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 63553 0.68 0.60715
Target:  5'- cCGCGCGAaauguccCGCCGcCg---CCGGCggUa -3'
miRNA:   3'- -GCGCGCU-------GCGGCuGaaaaGGCCGuuG- -5'
24012 3' -55.4 NC_005262.1 + 46707 0.7 0.543931
Target:  5'- gCGCGCGcaguggacaaGCCGGCgcaaUCCGGCAc- -3'
miRNA:   3'- -GCGCGCug--------CGGCUGaaa-AGGCCGUug -5'
24012 3' -55.4 NC_005262.1 + 23368 0.7 0.543931
Target:  5'- gCGCGCGGCGgCGAagg--CCcGCAACg -3'
miRNA:   3'- -GCGCGCUGCgGCUgaaaaGGcCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 47921 0.71 0.472004
Target:  5'- -uUGCaGACGCCGAgCg---CCGGCGACa -3'
miRNA:   3'- gcGCG-CUGCGGCU-GaaaaGGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 45765 0.71 0.482001
Target:  5'- -aCGCGACGCCGAUcggcaUCgCGGCGAa -3'
miRNA:   3'- gcGCGCUGCGGCUGaaa--AG-GCCGUUg -5'
24012 3' -55.4 NC_005262.1 + 55646 0.71 0.482001
Target:  5'- gCGCGCucGugGCCG-Cg--UCCGGCAc- -3'
miRNA:   3'- -GCGCG--CugCGGCuGaaaAGGCCGUug -5'
24012 3' -55.4 NC_005262.1 + 52938 0.7 0.4921
Target:  5'- gGCcuGCGcCGCCugGGCUUcgCCGGCGGCa -3'
miRNA:   3'- gCG--CGCuGCGG--CUGAAaaGGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 49185 0.7 0.4921
Target:  5'- gGCGCGcACGgCGAUgaucUCCGGCAu- -3'
miRNA:   3'- gCGCGC-UGCgGCUGaaa-AGGCCGUug -5'
24012 3' -55.4 NC_005262.1 + 30613 0.7 0.512581
Target:  5'- gGCGCGAagaucgagccgcCGCCGACgc--UCGGCAAg -3'
miRNA:   3'- gCGCGCU------------GCGGCUGaaaaGGCCGUUg -5'
24012 3' -55.4 NC_005262.1 + 45920 0.7 0.522954
Target:  5'- uGCGCG-CGCCGAUcaagUCgGGCuACg -3'
miRNA:   3'- gCGCGCuGCGGCUGaaa-AGgCCGuUG- -5'
24012 3' -55.4 NC_005262.1 + 56606 0.7 0.522954
Target:  5'- cCGCGCGugGgCGACgaag--GGCAGCu -3'
miRNA:   3'- -GCGCGCugCgGCUGaaaaggCCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.