miRNA display CGI


Results 1 - 20 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24012 3' -55.4 NC_005262.1 + 17645 0.66 0.777346
Target:  5'- nCGCGCGcCGCCGcgGCUg--CCGccucgcgcGCGACc -3'
miRNA:   3'- -GCGCGCuGCGGC--UGAaaaGGC--------CGUUG- -5'
24012 3' -55.4 NC_005262.1 + 22219 0.66 0.747146
Target:  5'- aGcCGCGGCgGCCaGACgauugCCGGCcACg -3'
miRNA:   3'- gC-GCGCUG-CGG-CUGaaaa-GGCCGuUG- -5'
24012 3' -55.4 NC_005262.1 + 27460 0.66 0.736838
Target:  5'- uCGCGgaGGCGCCGACga---CGGCcuCg -3'
miRNA:   3'- -GCGCg-CUGCGGCUGaaaagGCCGuuG- -5'
24012 3' -55.4 NC_005262.1 + 47844 0.83 0.089642
Target:  5'- cCGCGCGAUGCCGGgUUcgccgcggCCGGCGGCg -3'
miRNA:   3'- -GCGCGCUGCGGCUgAAaa------GGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 34075 0.66 0.767411
Target:  5'- cCGCGCccauguuACGCaCGACg--UCCaGCAGCu -3'
miRNA:   3'- -GCGCGc------UGCG-GCUGaaaAGGcCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 9062 0.66 0.767411
Target:  5'- uGCGCGGgGuuGGCUggcUCCGGa--- -3'
miRNA:   3'- gCGCGCUgCggCUGAaa-AGGCCguug -5'
24012 3' -55.4 NC_005262.1 + 50060 0.66 0.767411
Target:  5'- aGCG-GGCGCCG-CUgucucgUCGGCGAUc -3'
miRNA:   3'- gCGCgCUGCGGCuGAaaa---GGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 7502 0.66 0.767411
Target:  5'- gGaCGUGACGCCGGaauccUUCGGCcGCu -3'
miRNA:   3'- gC-GCGCUGCGGCUgaaa-AGGCCGuUG- -5'
24012 3' -55.4 NC_005262.1 + 1274 0.66 0.757341
Target:  5'- uCGCGCGGCGaacuCGcACUgggcUUCCGcGCAGg -3'
miRNA:   3'- -GCGCGCUGCg---GC-UGAa---AAGGC-CGUUg -5'
24012 3' -55.4 NC_005262.1 + 59225 0.66 0.747146
Target:  5'- gCGCGCGGCGaCgCGGCccggCCGGUucGCc -3'
miRNA:   3'- -GCGCGCUGC-G-GCUGaaaaGGCCGu-UG- -5'
24012 3' -55.4 NC_005262.1 + 45204 0.66 0.756327
Target:  5'- gCGCGCGGuguucgcggcaccCGCCGAgUUgagCgCGGuCAACg -3'
miRNA:   3'- -GCGCGCU-------------GCGGCUgAAaa-G-GCC-GUUG- -5'
24012 3' -55.4 NC_005262.1 + 61586 0.66 0.767411
Target:  5'- aGCGaGAUcauuuCCGACUgUUCCGGCcGCg -3'
miRNA:   3'- gCGCgCUGc----GGCUGAaAAGGCCGuUG- -5'
24012 3' -55.4 NC_005262.1 + 50920 0.66 0.777346
Target:  5'- gCGCGgGAUGCCaGCgugcccgucUCCGGCGc- -3'
miRNA:   3'- -GCGCgCUGCGGcUGaaa------AGGCCGUug -5'
24012 3' -55.4 NC_005262.1 + 49897 0.66 0.750217
Target:  5'- uCGCGCGGCcgaucggGCCgGACggugcaggggcgUCCGGCGcgGCa -3'
miRNA:   3'- -GCGCGCUG-------CGG-CUGaaa---------AGGCCGU--UG- -5'
24012 3' -55.4 NC_005262.1 + 32529 0.66 0.777346
Target:  5'- --aGCGAgccuucuucaUGCCGGCgaugaaaCCGGCAGCg -3'
miRNA:   3'- gcgCGCU----------GCGGCUGaaaa---GGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 31023 0.66 0.767411
Target:  5'- aGCGCGccgucAUGCCGGaa---UCGGCGACg -3'
miRNA:   3'- gCGCGC-----UGCGGCUgaaaaGGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 51240 0.66 0.747146
Target:  5'- uGCGCGcuCGgCGACUUcUUCaCGGCGu- -3'
miRNA:   3'- gCGCGCu-GCgGCUGAA-AAG-GCCGUug -5'
24012 3' -55.4 NC_005262.1 + 16441 0.66 0.736838
Target:  5'- aCGCgGCGGCGCCGAUcagcgcgCCGagccagaggaucGCGGCg -3'
miRNA:   3'- -GCG-CGCUGCGGCUGaaaa---GGC------------CGUUG- -5'
24012 3' -55.4 NC_005262.1 + 11075 0.66 0.767411
Target:  5'- cCGUGCGagcGCGaCCGGCguucCCGGCGc- -3'
miRNA:   3'- -GCGCGC---UGC-GGCUGaaaaGGCCGUug -5'
24012 3' -55.4 NC_005262.1 + 13557 0.66 0.767411
Target:  5'- gCGCGCGACGCgCGcggGCUUcgcgCCcuuGCGACc -3'
miRNA:   3'- -GCGCGCUGCG-GC---UGAAaa--GGc--CGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.