miRNA display CGI


Results 21 - 40 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24012 3' -55.4 NC_005262.1 + 51368 0.66 0.726428
Target:  5'- uGCGCaGCaGCCGGCgg--CCGGUGAg -3'
miRNA:   3'- gCGCGcUG-CGGCUGaaaaGGCCGUUg -5'
24012 3' -55.4 NC_005262.1 + 27460 0.66 0.736838
Target:  5'- uCGCGgaGGCGCCGACga---CGGCcuCg -3'
miRNA:   3'- -GCGCg-CUGCGGCUGaaaagGCCGuuG- -5'
24012 3' -55.4 NC_005262.1 + 61586 0.66 0.767411
Target:  5'- aGCGaGAUcauuuCCGACUgUUCCGGCcGCg -3'
miRNA:   3'- gCGCgCUGc----GGCUGAaAAGGCCGuUG- -5'
24012 3' -55.4 NC_005262.1 + 11075 0.66 0.767411
Target:  5'- cCGUGCGagcGCGaCCGGCguucCCGGCGc- -3'
miRNA:   3'- -GCGCGC---UGC-GGCUGaaaaGGCCGUug -5'
24012 3' -55.4 NC_005262.1 + 34565 0.67 0.683982
Target:  5'- cCGCGCGgaugugcucgaACGCCGuaggcUCCgGGCAGCc -3'
miRNA:   3'- -GCGCGC-----------UGCGGCugaaaAGG-CCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 17495 0.67 0.705344
Target:  5'- aGCGUGGCGCCcaGCg--UCuCGGCAu- -3'
miRNA:   3'- gCGCGCUGCGGc-UGaaaAG-GCCGUug -5'
24012 3' -55.4 NC_005262.1 + 22219 0.66 0.747146
Target:  5'- aGcCGCGGCgGCCaGACgauugCCGGCcACg -3'
miRNA:   3'- gC-GCGCUG-CGG-CUGaaaa-GGCCGuUG- -5'
24012 3' -55.4 NC_005262.1 + 32529 0.66 0.777346
Target:  5'- --aGCGAgccuucuucaUGCCGGCgaugaaaCCGGCAGCg -3'
miRNA:   3'- gcgCGCU----------GCGGCUGaaaa---GGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 4221 0.67 0.705344
Target:  5'- -aCGCGGCGCCGuuUUUUuaugcCCGGCuuucGCg -3'
miRNA:   3'- gcGCGCUGCGGCugAAAA-----GGCCGu---UG- -5'
24012 3' -55.4 NC_005262.1 + 50920 0.66 0.777346
Target:  5'- gCGCGgGAUGCCaGCgugcccgucUCCGGCGc- -3'
miRNA:   3'- -GCGCgCUGCGGcUGaaa------AGGCCGUug -5'
24012 3' -55.4 NC_005262.1 + 16441 0.66 0.736838
Target:  5'- aCGCgGCGGCGCCGAUcagcgcgCCGagccagaggaucGCGGCg -3'
miRNA:   3'- -GCG-CGCUGCGGCUGaaaa---GGC------------CGUUG- -5'
24012 3' -55.4 NC_005262.1 + 59461 0.66 0.726428
Target:  5'- uGCGCGAgCGCCuggagcucGGCguugCCGGCGuACu -3'
miRNA:   3'- gCGCGCU-GCGG--------CUGaaaaGGCCGU-UG- -5'
24012 3' -55.4 NC_005262.1 + 49897 0.66 0.750217
Target:  5'- uCGCGCGGCcgaucggGCCgGACggugcaggggcgUCCGGCGcgGCa -3'
miRNA:   3'- -GCGCGCUG-------CGG-CUGaaa---------AGGCCGU--UG- -5'
24012 3' -55.4 NC_005262.1 + 1274 0.66 0.757341
Target:  5'- uCGCGCGGCGaacuCGcACUgggcUUCCGcGCAGg -3'
miRNA:   3'- -GCGCGCUGCg---GC-UGAa---AAGGC-CGUUg -5'
24012 3' -55.4 NC_005262.1 + 50060 0.66 0.767411
Target:  5'- aGCG-GGCGCCG-CUgucucgUCGGCGAUc -3'
miRNA:   3'- gCGCgCUGCGGCuGAaaa---GGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 34075 0.66 0.767411
Target:  5'- cCGCGCccauguuACGCaCGACg--UCCaGCAGCu -3'
miRNA:   3'- -GCGCGc------UGCG-GCUGaaaAGGcCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 63394 0.67 0.673224
Target:  5'- gCGCGCGuguuccACGUCGACgccgagCCaGCAGCc -3'
miRNA:   3'- -GCGCGC------UGCGGCUGaaaa--GGcCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 54405 0.67 0.683982
Target:  5'- aGCGCGuCGauGACg--UCCuGGCGGCu -3'
miRNA:   3'- gCGCGCuGCggCUGaaaAGG-CCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 7719 0.67 0.694693
Target:  5'- cCGC-CGGCGUCGACa--UUCGGcCAACg -3'
miRNA:   3'- -GCGcGCUGCGGCUGaaaAGGCC-GUUG- -5'
24012 3' -55.4 NC_005262.1 + 45854 0.67 0.705344
Target:  5'- uCGcCGCGAUGCCGAUcggcgucgcgUUCgCGGgAACg -3'
miRNA:   3'- -GC-GCGCUGCGGCUGaa--------AAG-GCCgUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.