Results 41 - 60 of 206 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24012 | 3' | -55.4 | NC_005262.1 | + | 37877 | 0.67 | 0.692555 |
Target: 5'- -uCGCGACGUCGGuaucguaaaUCUGGCAGCg -3' miRNA: 3'- gcGCGCUGCGGCUgaaa-----AGGCCGUUG- -5' |
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24012 | 3' | -55.4 | NC_005262.1 | + | 22219 | 0.66 | 0.747146 |
Target: 5'- aGcCGCGGCgGCCaGACgauugCCGGCcACg -3' miRNA: 3'- gC-GCGCUG-CGG-CUGaaaa-GGCCGuUG- -5' |
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24012 | 3' | -55.4 | NC_005262.1 | + | 32529 | 0.66 | 0.777346 |
Target: 5'- --aGCGAgccuucuucaUGCCGGCgaugaaaCCGGCAGCg -3' miRNA: 3'- gcgCGCU----------GCGGCUGaaaa---GGCCGUUG- -5' |
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24012 | 3' | -55.4 | NC_005262.1 | + | 11488 | 0.67 | 0.694693 |
Target: 5'- gGCGCGGCG-CGGCU---UCGGCGu- -3' miRNA: 3'- gCGCGCUGCgGCUGAaaaGGCCGUug -5' |
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24012 | 3' | -55.4 | NC_005262.1 | + | 50920 | 0.66 | 0.777346 |
Target: 5'- gCGCGgGAUGCCaGCgugcccgucUCCGGCGc- -3' miRNA: 3'- -GCGCgCUGCGGcUGaaa------AGGCCGUug -5' |
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24012 | 3' | -55.4 | NC_005262.1 | + | 55714 | 0.69 | 0.597417 |
Target: 5'- gCGCGCGGC-CCGGCUUcuugCUGcGCAGg -3' miRNA: 3'- -GCGCGCUGcGGCUGAAaa--GGC-CGUUg -5' |
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24012 | 3' | -55.4 | NC_005262.1 | + | 34075 | 0.66 | 0.767411 |
Target: 5'- cCGCGCccauguuACGCaCGACg--UCCaGCAGCu -3' miRNA: 3'- -GCGCGc------UGCG-GCUGaaaAGGcCGUUG- -5' |
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24012 | 3' | -55.4 | NC_005262.1 | + | 167 | 0.68 | 0.619068 |
Target: 5'- gCGUGCGGCgcgGCCGACUUcUUCgCGaGCcGCg -3' miRNA: 3'- -GCGCGCUG---CGGCUGAA-AAG-GC-CGuUG- -5' |
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24012 | 3' | -55.4 | NC_005262.1 | + | 50176 | 0.68 | 0.629914 |
Target: 5'- uCGCGCGGCGCgGGuucggUCgGcGCAGCg -3' miRNA: 3'- -GCGCGCUGCGgCUgaaa-AGgC-CGUUG- -5' |
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24012 | 3' | -55.4 | NC_005262.1 | + | 17078 | 0.68 | 0.640763 |
Target: 5'- aGCGCG-CGCuCGGCcgg--CGGCAGCa -3' miRNA: 3'- gCGCGCuGCG-GCUGaaaagGCCGUUG- -5' |
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24012 | 3' | -55.4 | NC_005262.1 | + | 17568 | 0.68 | 0.651604 |
Target: 5'- gCGCGCGGCGCgCG-CUUcgUCCuggaacucGGCGAa -3' miRNA: 3'- -GCGCGCUGCG-GCuGAAa-AGG--------CCGUUg -5' |
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24012 | 3' | -55.4 | NC_005262.1 | + | 63394 | 0.67 | 0.673224 |
Target: 5'- gCGCGCGuguuccACGUCGACgccgagCCaGCAGCc -3' miRNA: 3'- -GCGCGC------UGCGGCUGaaaa--GGcCGUUG- -5' |
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24012 | 3' | -55.4 | NC_005262.1 | + | 54405 | 0.67 | 0.683982 |
Target: 5'- aGCGCGuCGauGACg--UCCuGGCGGCu -3' miRNA: 3'- gCGCGCuGCggCUGaaaAGG-CCGUUG- -5' |
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24012 | 3' | -55.4 | NC_005262.1 | + | 32867 | 0.67 | 0.704282 |
Target: 5'- gGCGCGcCGCCGgugucgaGCUUgu-CGGCGAUc -3' miRNA: 3'- gCGCGCuGCGGC-------UGAAaagGCCGUUG- -5' |
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24012 | 3' | -55.4 | NC_005262.1 | + | 4221 | 0.67 | 0.705344 |
Target: 5'- -aCGCGGCGCCGuuUUUUuaugcCCGGCuuucGCg -3' miRNA: 3'- gcGCGCUGCGGCugAAAA-----GGCCGu---UG- -5' |
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24012 | 3' | -55.4 | NC_005262.1 | + | 51368 | 0.66 | 0.726428 |
Target: 5'- uGCGCaGCaGCCGGCgg--CCGGUGAg -3' miRNA: 3'- gCGCGcUG-CGGCUGaaaaGGCCGUUg -5' |
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24012 | 3' | -55.4 | NC_005262.1 | + | 27460 | 0.66 | 0.736838 |
Target: 5'- uCGCGgaGGCGCCGACga---CGGCcuCg -3' miRNA: 3'- -GCGCg-CUGCGGCUGaaaagGCCGuuG- -5' |
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24012 | 3' | -55.4 | NC_005262.1 | + | 49897 | 0.66 | 0.750217 |
Target: 5'- uCGCGCGGCcgaucggGCCgGACggugcaggggcgUCCGGCGcgGCa -3' miRNA: 3'- -GCGCGCUG-------CGG-CUGaaa---------AGGCCGU--UG- -5' |
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24012 | 3' | -55.4 | NC_005262.1 | + | 1274 | 0.66 | 0.757341 |
Target: 5'- uCGCGCGGCGaacuCGcACUgggcUUCCGcGCAGg -3' miRNA: 3'- -GCGCGCUGCg---GC-UGAa---AAGGC-CGUUg -5' |
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24012 | 3' | -55.4 | NC_005262.1 | + | 50060 | 0.66 | 0.767411 |
Target: 5'- aGCG-GGCGCCG-CUgucucgUCGGCGAUc -3' miRNA: 3'- gCGCgCUGCGGCuGAaaa---GGCCGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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