miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24012 5' -55.2 NC_005262.1 + 42121 0.66 0.7723
Target:  5'- cGUGgaUGGCuuGGGAUAagCCGgucuacgCGGCGCCg -3'
miRNA:   3'- -UAC--ACCGu-CCUUAUg-GGCa------GCUGCGG- -5'
24012 5' -55.2 NC_005262.1 + 33620 0.66 0.76223
Target:  5'- -cGUcGCAGGAAaAgCCGcCGGCGCa -3'
miRNA:   3'- uaCAcCGUCCUUaUgGGCaGCUGCGg -5'
24012 5' -55.2 NC_005262.1 + 35827 0.66 0.76223
Target:  5'- cAUG-GGCcGGA--GCggCGUCGGCGCCg -3'
miRNA:   3'- -UACaCCGuCCUuaUGg-GCAGCUGCGG- -5'
24012 5' -55.2 NC_005262.1 + 50924 0.66 0.751002
Target:  5'- cUGcGcGCGGGAugccagcGUGCCCGUCuccGGCGCg -3'
miRNA:   3'- uACaC-CGUCCU-------UAUGGGCAG---CUGCGg -5'
24012 5' -55.2 NC_005262.1 + 25800 0.66 0.748944
Target:  5'- -gGUGGCAGGc--GCCCGaguaccggauggacUCGGC-CCa -3'
miRNA:   3'- uaCACCGUCCuuaUGGGC--------------AGCUGcGG- -5'
24012 5' -55.2 NC_005262.1 + 28507 0.66 0.741707
Target:  5'- gAUGUGGgCGGGcccgaGCCCGUac-CGCCa -3'
miRNA:   3'- -UACACC-GUCCuua--UGGGCAgcuGCGG- -5'
24012 5' -55.2 NC_005262.1 + 41645 0.66 0.741707
Target:  5'- gGUGUcGGuCAGGuuguuUCCGgCGGCGCCg -3'
miRNA:   3'- -UACA-CC-GUCCuuau-GGGCaGCUGCGG- -5'
24012 5' -55.2 NC_005262.1 + 2135 0.66 0.738589
Target:  5'- --cUGGCuGGGAUGcucgcuacgcgcCCCGUCGagcagcacgaagcaGCGCCg -3'
miRNA:   3'- uacACCGuCCUUAU------------GGGCAGC--------------UGCGG- -5'
24012 5' -55.2 NC_005262.1 + 40021 0.66 0.731277
Target:  5'- ---aGGgAGGAAU-CCCGcgCGGCGCa -3'
miRNA:   3'- uacaCCgUCCUUAuGGGCa-GCUGCGg -5'
24012 5' -55.2 NC_005262.1 + 46826 0.67 0.720749
Target:  5'- -cGUGGCGGcGAucgAUCCGgUCG-UGCCg -3'
miRNA:   3'- uaCACCGUC-CUua-UGGGC-AGCuGCGG- -5'
24012 5' -55.2 NC_005262.1 + 54206 0.67 0.720749
Target:  5'- -aGUaGGCgAGG---GCgCCGUCGACGUCg -3'
miRNA:   3'- uaCA-CCG-UCCuuaUG-GGCAGCUGCGG- -5'
24012 5' -55.2 NC_005262.1 + 35529 0.67 0.710134
Target:  5'- -cGUGGCAGGGcuucgGCCaagccgcgaUGUCGcuCGCCg -3'
miRNA:   3'- uaCACCGUCCUua---UGG---------GCAGCu-GCGG- -5'
24012 5' -55.2 NC_005262.1 + 5060 0.67 0.699444
Target:  5'- ---cGGCGGGcagGCCCG-CGGCGgCg -3'
miRNA:   3'- uacaCCGUCCuuaUGGGCaGCUGCgG- -5'
24012 5' -55.2 NC_005262.1 + 35797 0.67 0.699444
Target:  5'- -cGUGGCcgu----CCCGcCGACGCCg -3'
miRNA:   3'- uaCACCGuccuuauGGGCaGCUGCGG- -5'
24012 5' -55.2 NC_005262.1 + 15729 0.67 0.699444
Target:  5'- ---aGGCgagGGGGAUGCCCGaCGcguucagccGCGCCu -3'
miRNA:   3'- uacaCCG---UCCUUAUGGGCaGC---------UGCGG- -5'
24012 5' -55.2 NC_005262.1 + 46578 0.67 0.682211
Target:  5'- ---cGGUcGGAGUGCUcaugucgacgggcugCGUCGugGCCg -3'
miRNA:   3'- uacaCCGuCCUUAUGG---------------GCAGCugCGG- -5'
24012 5' -55.2 NC_005262.1 + 115 0.67 0.667032
Target:  5'- ---aGGCAcuGGAgcAUGCCa-UCGACGCCg -3'
miRNA:   3'- uacaCCGU--CCU--UAUGGgcAGCUGCGG- -5'
24012 5' -55.2 NC_005262.1 + 24932 0.67 0.665945
Target:  5'- --aUGGCGGGAugcgcacAUGCCgCG-CGGCGCg -3'
miRNA:   3'- uacACCGUCCU-------UAUGG-GCaGCUGCGg -5'
24012 5' -55.2 NC_005262.1 + 17072 0.68 0.656149
Target:  5'- ---cGGCgccgauAGGcgcGCCCGUCGACGCg -3'
miRNA:   3'- uacaCCG------UCCuuaUGGGCAGCUGCGg -5'
24012 5' -55.2 NC_005262.1 + 23480 0.68 0.645245
Target:  5'- aAUGgcugGGCgAGGuucGCCCGcUGACGCCc -3'
miRNA:   3'- -UACa---CCG-UCCuuaUGGGCaGCUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.