miRNA display CGI


Results 21 - 33 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24012 5' -55.2 NC_005262.1 + 23154 0.68 0.634329
Target:  5'- cUGcgGGCGGGuucgGUAUCgCGUCGAUGCa -3'
miRNA:   3'- uACa-CCGUCCu---UAUGG-GCAGCUGCGg -5'
24012 5' -55.2 NC_005262.1 + 4730 0.68 0.634329
Target:  5'- -gGUGaGCAGGcGGUGCUCGagcuccugcCGGCGCCa -3'
miRNA:   3'- uaCAC-CGUCC-UUAUGGGCa--------GCUGCGG- -5'
24012 5' -55.2 NC_005262.1 + 6684 0.68 0.62341
Target:  5'- ---cGGC-GGAAcuggaGCCCGUCGACGUUc -3'
miRNA:   3'- uacaCCGuCCUUa----UGGGCAGCUGCGG- -5'
24012 5' -55.2 NC_005262.1 + 36824 0.68 0.62341
Target:  5'- -cGUGcGCAGaacugcGCCCG-CGGCGCCa -3'
miRNA:   3'- uaCAC-CGUCcuua--UGGGCaGCUGCGG- -5'
24012 5' -55.2 NC_005262.1 + 46136 0.68 0.6125
Target:  5'- ---aGGCguaugAGGAGUACCag-CGGCGCCu -3'
miRNA:   3'- uacaCCG-----UCCUUAUGGgcaGCUGCGG- -5'
24012 5' -55.2 NC_005262.1 + 7526 0.69 0.601606
Target:  5'- ---gGGCAGGuucggcgGCgCGUCGGCGCg -3'
miRNA:   3'- uacaCCGUCCuua----UGgGCAGCUGCGg -5'
24012 5' -55.2 NC_005262.1 + 11242 0.69 0.579904
Target:  5'- uUGUcGCAGGGccGCCCGUgCGACcggaGCCa -3'
miRNA:   3'- uACAcCGUCCUuaUGGGCA-GCUG----CGG- -5'
24012 5' -55.2 NC_005262.1 + 49999 0.7 0.537072
Target:  5'- ---aGGCGGuacugcUGCCCGUCGuCGCCg -3'
miRNA:   3'- uacaCCGUCcuu---AUGGGCAGCuGCGG- -5'
24012 5' -55.2 NC_005262.1 + 40714 0.7 0.526526
Target:  5'- -cGUGGCcGGggU---CGUUGACGCCg -3'
miRNA:   3'- uaCACCGuCCuuAuggGCAGCUGCGG- -5'
24012 5' -55.2 NC_005262.1 + 63665 0.7 0.505678
Target:  5'- --cUGGCuGGAAUugCCGgCGACGgCg -3'
miRNA:   3'- uacACCGuCCUUAugGGCaGCUGCgG- -5'
24012 5' -55.2 NC_005262.1 + 33262 0.7 0.495387
Target:  5'- -aGUGGUAGGucuUGCCCGgcaucUCGACGaCg -3'
miRNA:   3'- uaCACCGUCCuu-AUGGGC-----AGCUGCgG- -5'
24012 5' -55.2 NC_005262.1 + 52679 0.7 0.495387
Target:  5'- uUGUGaagcagcucgaGCAGGAAggccGCCgGcCGACGCCg -3'
miRNA:   3'- uACAC-----------CGUCCUUa---UGGgCaGCUGCGG- -5'
24012 5' -55.2 NC_005262.1 + 25968 1.09 0.001265
Target:  5'- uAUGUGGCAGGAAUACCCGUCGACGCCc -3'
miRNA:   3'- -UACACCGUCCUUAUGGGCAGCUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.