miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24012 5' -55.2 NC_005262.1 + 63665 0.7 0.505678
Target:  5'- --cUGGCuGGAAUugCCGgCGACGgCg -3'
miRNA:   3'- uacACCGuCCUUAugGGCaGCUGCgG- -5'
24012 5' -55.2 NC_005262.1 + 54206 0.67 0.720749
Target:  5'- -aGUaGGCgAGG---GCgCCGUCGACGUCg -3'
miRNA:   3'- uaCA-CCG-UCCuuaUG-GGCAGCUGCGG- -5'
24012 5' -55.2 NC_005262.1 + 52679 0.7 0.495387
Target:  5'- uUGUGaagcagcucgaGCAGGAAggccGCCgGcCGACGCCg -3'
miRNA:   3'- uACAC-----------CGUCCUUa---UGGgCaGCUGCGG- -5'
24012 5' -55.2 NC_005262.1 + 50924 0.66 0.751002
Target:  5'- cUGcGcGCGGGAugccagcGUGCCCGUCuccGGCGCg -3'
miRNA:   3'- uACaC-CGUCCU-------UAUGGGCAG---CUGCGg -5'
24012 5' -55.2 NC_005262.1 + 49999 0.7 0.537072
Target:  5'- ---aGGCGGuacugcUGCCCGUCGuCGCCg -3'
miRNA:   3'- uacaCCGUCcuu---AUGGGCAGCuGCGG- -5'
24012 5' -55.2 NC_005262.1 + 46826 0.67 0.720749
Target:  5'- -cGUGGCGGcGAucgAUCCGgUCG-UGCCg -3'
miRNA:   3'- uaCACCGUC-CUua-UGGGC-AGCuGCGG- -5'
24012 5' -55.2 NC_005262.1 + 46578 0.67 0.682211
Target:  5'- ---cGGUcGGAGUGCUcaugucgacgggcugCGUCGugGCCg -3'
miRNA:   3'- uacaCCGuCCUUAUGG---------------GCAGCugCGG- -5'
24012 5' -55.2 NC_005262.1 + 46136 0.68 0.6125
Target:  5'- ---aGGCguaugAGGAGUACCag-CGGCGCCu -3'
miRNA:   3'- uacaCCG-----UCCUUAUGGgcaGCUGCGG- -5'
24012 5' -55.2 NC_005262.1 + 42121 0.66 0.7723
Target:  5'- cGUGgaUGGCuuGGGAUAagCCGgucuacgCGGCGCCg -3'
miRNA:   3'- -UAC--ACCGu-CCUUAUg-GGCa------GCUGCGG- -5'
24012 5' -55.2 NC_005262.1 + 41645 0.66 0.741707
Target:  5'- gGUGUcGGuCAGGuuguuUCCGgCGGCGCCg -3'
miRNA:   3'- -UACA-CC-GUCCuuau-GGGCaGCUGCGG- -5'
24012 5' -55.2 NC_005262.1 + 40714 0.7 0.526526
Target:  5'- -cGUGGCcGGggU---CGUUGACGCCg -3'
miRNA:   3'- uaCACCGuCCuuAuggGCAGCUGCGG- -5'
24012 5' -55.2 NC_005262.1 + 40021 0.66 0.731277
Target:  5'- ---aGGgAGGAAU-CCCGcgCGGCGCa -3'
miRNA:   3'- uacaCCgUCCUUAuGGGCa-GCUGCGg -5'
24012 5' -55.2 NC_005262.1 + 36824 0.68 0.62341
Target:  5'- -cGUGcGCAGaacugcGCCCG-CGGCGCCa -3'
miRNA:   3'- uaCAC-CGUCcuua--UGGGCaGCUGCGG- -5'
24012 5' -55.2 NC_005262.1 + 35827 0.66 0.76223
Target:  5'- cAUG-GGCcGGA--GCggCGUCGGCGCCg -3'
miRNA:   3'- -UACaCCGuCCUuaUGg-GCAGCUGCGG- -5'
24012 5' -55.2 NC_005262.1 + 35797 0.67 0.699444
Target:  5'- -cGUGGCcgu----CCCGcCGACGCCg -3'
miRNA:   3'- uaCACCGuccuuauGGGCaGCUGCGG- -5'
24012 5' -55.2 NC_005262.1 + 35529 0.67 0.710134
Target:  5'- -cGUGGCAGGGcuucgGCCaagccgcgaUGUCGcuCGCCg -3'
miRNA:   3'- uaCACCGUCCUua---UGG---------GCAGCu-GCGG- -5'
24012 5' -55.2 NC_005262.1 + 33620 0.66 0.76223
Target:  5'- -cGUcGCAGGAAaAgCCGcCGGCGCa -3'
miRNA:   3'- uaCAcCGUCCUUaUgGGCaGCUGCGg -5'
24012 5' -55.2 NC_005262.1 + 33262 0.7 0.495387
Target:  5'- -aGUGGUAGGucuUGCCCGgcaucUCGACGaCg -3'
miRNA:   3'- uaCACCGUCCuu-AUGGGC-----AGCUGCgG- -5'
24012 5' -55.2 NC_005262.1 + 28507 0.66 0.741707
Target:  5'- gAUGUGGgCGGGcccgaGCCCGUac-CGCCa -3'
miRNA:   3'- -UACACC-GUCCuua--UGGGCAgcuGCGG- -5'
24012 5' -55.2 NC_005262.1 + 25968 1.09 0.001265
Target:  5'- uAUGUGGCAGGAAUACCCGUCGACGCCc -3'
miRNA:   3'- -UACACCGUCCUUAUGGGCAGCUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.