miRNA display CGI


Results 21 - 33 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24012 5' -55.2 NC_005262.1 + 25800 0.66 0.748944
Target:  5'- -gGUGGCAGGc--GCCCGaguaccggauggacUCGGC-CCa -3'
miRNA:   3'- uaCACCGUCCuuaUGGGC--------------AGCUGcGG- -5'
24012 5' -55.2 NC_005262.1 + 24932 0.67 0.665945
Target:  5'- --aUGGCGGGAugcgcacAUGCCgCG-CGGCGCg -3'
miRNA:   3'- uacACCGUCCU-------UAUGG-GCaGCUGCGg -5'
24012 5' -55.2 NC_005262.1 + 23480 0.68 0.645245
Target:  5'- aAUGgcugGGCgAGGuucGCCCGcUGACGCCc -3'
miRNA:   3'- -UACa---CCG-UCCuuaUGGGCaGCUGCGG- -5'
24012 5' -55.2 NC_005262.1 + 23154 0.68 0.634329
Target:  5'- cUGcgGGCGGGuucgGUAUCgCGUCGAUGCa -3'
miRNA:   3'- uACa-CCGUCCu---UAUGG-GCAGCUGCGg -5'
24012 5' -55.2 NC_005262.1 + 17072 0.68 0.656149
Target:  5'- ---cGGCgccgauAGGcgcGCCCGUCGACGCg -3'
miRNA:   3'- uacaCCG------UCCuuaUGGGCAGCUGCGg -5'
24012 5' -55.2 NC_005262.1 + 15729 0.67 0.699444
Target:  5'- ---aGGCgagGGGGAUGCCCGaCGcguucagccGCGCCu -3'
miRNA:   3'- uacaCCG---UCCUUAUGGGCaGC---------UGCGG- -5'
24012 5' -55.2 NC_005262.1 + 11242 0.69 0.579904
Target:  5'- uUGUcGCAGGGccGCCCGUgCGACcggaGCCa -3'
miRNA:   3'- uACAcCGUCCUuaUGGGCA-GCUG----CGG- -5'
24012 5' -55.2 NC_005262.1 + 7526 0.69 0.601606
Target:  5'- ---gGGCAGGuucggcgGCgCGUCGGCGCg -3'
miRNA:   3'- uacaCCGUCCuua----UGgGCAGCUGCGg -5'
24012 5' -55.2 NC_005262.1 + 6684 0.68 0.62341
Target:  5'- ---cGGC-GGAAcuggaGCCCGUCGACGUUc -3'
miRNA:   3'- uacaCCGuCCUUa----UGGGCAGCUGCGG- -5'
24012 5' -55.2 NC_005262.1 + 5060 0.67 0.699444
Target:  5'- ---cGGCGGGcagGCCCG-CGGCGgCg -3'
miRNA:   3'- uacaCCGUCCuuaUGGGCaGCUGCgG- -5'
24012 5' -55.2 NC_005262.1 + 4730 0.68 0.634329
Target:  5'- -gGUGaGCAGGcGGUGCUCGagcuccugcCGGCGCCa -3'
miRNA:   3'- uaCAC-CGUCC-UUAUGGGCa--------GCUGCGG- -5'
24012 5' -55.2 NC_005262.1 + 2135 0.66 0.738589
Target:  5'- --cUGGCuGGGAUGcucgcuacgcgcCCCGUCGagcagcacgaagcaGCGCCg -3'
miRNA:   3'- uacACCGuCCUUAU------------GGGCAGC--------------UGCGG- -5'
24012 5' -55.2 NC_005262.1 + 115 0.67 0.667032
Target:  5'- ---aGGCAcuGGAgcAUGCCa-UCGACGCCg -3'
miRNA:   3'- uacaCCGU--CCU--UAUGGgcAGCUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.