Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24012 | 5' | -55.2 | NC_005262.1 | + | 46826 | 0.67 | 0.720749 |
Target: 5'- -cGUGGCGGcGAucgAUCCGgUCG-UGCCg -3' miRNA: 3'- uaCACCGUC-CUua-UGGGC-AGCuGCGG- -5' |
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24012 | 5' | -55.2 | NC_005262.1 | + | 2135 | 0.66 | 0.738589 |
Target: 5'- --cUGGCuGGGAUGcucgcuacgcgcCCCGUCGagcagcacgaagcaGCGCCg -3' miRNA: 3'- uacACCGuCCUUAU------------GGGCAGC--------------UGCGG- -5' |
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24012 | 5' | -55.2 | NC_005262.1 | + | 50924 | 0.66 | 0.751002 |
Target: 5'- cUGcGcGCGGGAugccagcGUGCCCGUCuccGGCGCg -3' miRNA: 3'- uACaC-CGUCCU-------UAUGGGCAG---CUGCGg -5' |
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24012 | 5' | -55.2 | NC_005262.1 | + | 36824 | 0.68 | 0.62341 |
Target: 5'- -cGUGcGCAGaacugcGCCCG-CGGCGCCa -3' miRNA: 3'- uaCAC-CGUCcuua--UGGGCaGCUGCGG- -5' |
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24012 | 5' | -55.2 | NC_005262.1 | + | 115 | 0.67 | 0.667032 |
Target: 5'- ---aGGCAcuGGAgcAUGCCa-UCGACGCCg -3' miRNA: 3'- uacaCCGU--CCU--UAUGGgcAGCUGCGG- -5' |
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24012 | 5' | -55.2 | NC_005262.1 | + | 46578 | 0.67 | 0.682211 |
Target: 5'- ---cGGUcGGAGUGCUcaugucgacgggcugCGUCGugGCCg -3' miRNA: 3'- uacaCCGuCCUUAUGG---------------GCAGCugCGG- -5' |
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24012 | 5' | -55.2 | NC_005262.1 | + | 40714 | 0.7 | 0.526526 |
Target: 5'- -cGUGGCcGGggU---CGUUGACGCCg -3' miRNA: 3'- uaCACCGuCCuuAuggGCAGCUGCGG- -5' |
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24012 | 5' | -55.2 | NC_005262.1 | + | 49999 | 0.7 | 0.537072 |
Target: 5'- ---aGGCGGuacugcUGCCCGUCGuCGCCg -3' miRNA: 3'- uacaCCGUCcuu---AUGGGCAGCuGCGG- -5' |
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24012 | 5' | -55.2 | NC_005262.1 | + | 23154 | 0.68 | 0.634329 |
Target: 5'- cUGcgGGCGGGuucgGUAUCgCGUCGAUGCa -3' miRNA: 3'- uACa-CCGUCCu---UAUGG-GCAGCUGCGg -5' |
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24012 | 5' | -55.2 | NC_005262.1 | + | 15729 | 0.67 | 0.699444 |
Target: 5'- ---aGGCgagGGGGAUGCCCGaCGcguucagccGCGCCu -3' miRNA: 3'- uacaCCG---UCCUUAUGGGCaGC---------UGCGG- -5' |
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24012 | 5' | -55.2 | NC_005262.1 | + | 54206 | 0.67 | 0.720749 |
Target: 5'- -aGUaGGCgAGG---GCgCCGUCGACGUCg -3' miRNA: 3'- uaCA-CCG-UCCuuaUG-GGCAGCUGCGG- -5' |
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24012 | 5' | -55.2 | NC_005262.1 | + | 33262 | 0.7 | 0.495387 |
Target: 5'- -aGUGGUAGGucuUGCCCGgcaucUCGACGaCg -3' miRNA: 3'- uaCACCGUCCuu-AUGGGC-----AGCUGCgG- -5' |
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24012 | 5' | -55.2 | NC_005262.1 | + | 35797 | 0.67 | 0.699444 |
Target: 5'- -cGUGGCcgu----CCCGcCGACGCCg -3' miRNA: 3'- uaCACCGuccuuauGGGCaGCUGCGG- -5' |
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24012 | 5' | -55.2 | NC_005262.1 | + | 11242 | 0.69 | 0.579904 |
Target: 5'- uUGUcGCAGGGccGCCCGUgCGACcggaGCCa -3' miRNA: 3'- uACAcCGUCCUuaUGGGCA-GCUG----CGG- -5' |
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24012 | 5' | -55.2 | NC_005262.1 | + | 40021 | 0.66 | 0.731277 |
Target: 5'- ---aGGgAGGAAU-CCCGcgCGGCGCa -3' miRNA: 3'- uacaCCgUCCUUAuGGGCa-GCUGCGg -5' |
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24012 | 5' | -55.2 | NC_005262.1 | + | 25800 | 0.66 | 0.748944 |
Target: 5'- -gGUGGCAGGc--GCCCGaguaccggauggacUCGGC-CCa -3' miRNA: 3'- uaCACCGUCCuuaUGGGC--------------AGCUGcGG- -5' |
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24012 | 5' | -55.2 | NC_005262.1 | + | 41645 | 0.66 | 0.741707 |
Target: 5'- gGUGUcGGuCAGGuuguuUCCGgCGGCGCCg -3' miRNA: 3'- -UACA-CC-GUCCuuau-GGGCaGCUGCGG- -5' |
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24012 | 5' | -55.2 | NC_005262.1 | + | 28507 | 0.66 | 0.741707 |
Target: 5'- gAUGUGGgCGGGcccgaGCCCGUac-CGCCa -3' miRNA: 3'- -UACACC-GUCCuua--UGGGCAgcuGCGG- -5' |
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24012 | 5' | -55.2 | NC_005262.1 | + | 35529 | 0.67 | 0.710134 |
Target: 5'- -cGUGGCAGGGcuucgGCCaagccgcgaUGUCGcuCGCCg -3' miRNA: 3'- uaCACCGUCCUua---UGG---------GCAGCu-GCGG- -5' |
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24012 | 5' | -55.2 | NC_005262.1 | + | 4730 | 0.68 | 0.634329 |
Target: 5'- -gGUGaGCAGGcGGUGCUCGagcuccugcCGGCGCCa -3' miRNA: 3'- uaCAC-CGUCC-UUAUGGGCa--------GCUGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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