miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24013 5' -57 NC_005262.1 + 19180 0.65 0.679365
Target:  5'- uUGGuGACGgcgUGGCuGCAucaguucaaggagcGCGGCGGCGu -3'
miRNA:   3'- gACC-CUGUa--GCCGuUGU--------------CGCUGCCGU- -5'
24013 5' -57 NC_005262.1 + 27808 0.66 0.671853
Target:  5'- aCUGGauCAUCGGUAGCgagaAGCG-CGGCc -3'
miRNA:   3'- -GACCcuGUAGCCGUUG----UCGCuGCCGu -5'
24013 5' -57 NC_005262.1 + 59738 0.66 0.670778
Target:  5'- -cGGGuuGUCGGCGAcCAGCGcgaggagagacugGCGcGCGa -3'
miRNA:   3'- gaCCCugUAGCCGUU-GUCGC-------------UGC-CGU- -5'
24013 5' -57 NC_005262.1 + 11632 0.66 0.661091
Target:  5'- cCUGcacCAUCGGCucgGCGGCGcCGGCGu -3'
miRNA:   3'- -GACccuGUAGCCGu--UGUCGCuGCCGU- -5'
24013 5' -57 NC_005262.1 + 47741 0.66 0.661091
Target:  5'- uCUGGuGCGccgcCGGCcGCGGCGAaccCGGCAu -3'
miRNA:   3'- -GACCcUGUa---GCCGuUGUCGCU---GCCGU- -5'
24013 5' -57 NC_005262.1 + 52751 0.66 0.661091
Target:  5'- gCUGGGGCGcCaGCGAgAucGCGAaCGGCAu -3'
miRNA:   3'- -GACCCUGUaGcCGUUgU--CGCU-GCCGU- -5'
24013 5' -57 NC_005262.1 + 61128 0.66 0.660013
Target:  5'- -gGGGACGguguacgacgcgcUgGcGCAGCAgaucGCGGCGGCGg -3'
miRNA:   3'- gaCCCUGU-------------AgC-CGUUGU----CGCUGCCGU- -5'
24013 5' -57 NC_005262.1 + 3947 0.66 0.660013
Target:  5'- -aGGGACuGUCGGCcuaccauCAGCGGCacgucacgcgcggGGCGc -3'
miRNA:   3'- gaCCCUG-UAGCCGuu-----GUCGCUG-------------CCGU- -5'
24013 5' -57 NC_005262.1 + 33691 0.66 0.650303
Target:  5'- cCUGcGACGUCggGGCGACuGCGGUGGCc -3'
miRNA:   3'- -GACcCUGUAG--CCGUUGuCGCUGCCGu -5'
24013 5' -57 NC_005262.1 + 29616 0.66 0.647063
Target:  5'- uUGGGAugacccgaacacgcCGcaacCGGCAucgGCAGCGAgCGGCAu -3'
miRNA:   3'- gACCCU--------------GUa---GCCGU---UGUCGCU-GCCGU- -5'
24013 5' -57 NC_005262.1 + 49638 0.66 0.639498
Target:  5'- -cGGuGGCcucgcgAUCGGCGGCcugcaaGGCGGCGGCn -3'
miRNA:   3'- gaCC-CUG------UAGCCGUUG------UCGCUGCCGu -5'
24013 5' -57 NC_005262.1 + 6983 0.66 0.639498
Target:  5'- gUGGGGCAcgCGGCucgaaaacgcGAUcGCGGcCGGCAu -3'
miRNA:   3'- gACCCUGUa-GCCG----------UUGuCGCU-GCCGU- -5'
24013 5' -57 NC_005262.1 + 62671 0.66 0.639498
Target:  5'- gUGGGuuuaGUCcGCc-CGGCGGCGGCAg -3'
miRNA:   3'- gACCCug--UAGcCGuuGUCGCUGCCGU- -5'
24013 5' -57 NC_005262.1 + 56272 0.66 0.639498
Target:  5'- --cGGACAUCGGgcuCGGCGAgcaguCGGCGa -3'
miRNA:   3'- gacCCUGUAGCCguuGUCGCU-----GCCGU- -5'
24013 5' -57 NC_005262.1 + 51041 0.67 0.617881
Target:  5'- -cGGccuGCGUCGGCuuCAGCucGGCGGCc -3'
miRNA:   3'- gaCCc--UGUAGCCGuuGUCG--CUGCCGu -5'
24013 5' -57 NC_005262.1 + 28528 0.67 0.617881
Target:  5'- -cGGcGACA-CGGCGagcACGGCG-CGGCc -3'
miRNA:   3'- gaCC-CUGUaGCCGU---UGUCGCuGCCGu -5'
24013 5' -57 NC_005262.1 + 46688 0.67 0.607085
Target:  5'- -cGGGAUcugUGGCGucuGCGGCGAggaCGGCGc -3'
miRNA:   3'- gaCCCUGua-GCCGU---UGUCGCU---GCCGU- -5'
24013 5' -57 NC_005262.1 + 40359 0.67 0.59631
Target:  5'- gCUGaugucGAuCGUCGGCGACGuCGACGGCc -3'
miRNA:   3'- -GACc----CU-GUAGCCGUUGUcGCUGCCGu -5'
24013 5' -57 NC_005262.1 + 45227 0.67 0.59631
Target:  5'- -cGGGcucggccugaACGcCGGCAACucGGCGAcCGGCAa -3'
miRNA:   3'- gaCCC----------UGUaGCCGUUG--UCGCU-GCCGU- -5'
24013 5' -57 NC_005262.1 + 61313 0.67 0.585565
Target:  5'- --cGGAUAUgGGCAgcaugucgaGCAGCGACGuGCc -3'
miRNA:   3'- gacCCUGUAgCCGU---------UGUCGCUGC-CGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.