Results 21 - 40 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24013 | 5' | -57 | NC_005262.1 | + | 28560 | 0.71 | 0.352799 |
Target: 5'- uCUGGGGCuUCcGCcGCGcgcGCGACGGCAu -3' miRNA: 3'- -GACCCUGuAGcCGuUGU---CGCUGCCGU- -5' |
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24013 | 5' | -57 | NC_005262.1 | + | 30569 | 0.7 | 0.414023 |
Target: 5'- --aGGACGaCGGCAGCAagGACGGCAa -3' miRNA: 3'- gacCCUGUaGCCGUUGUcgCUGCCGU- -5' |
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24013 | 5' | -57 | NC_005262.1 | + | 46650 | 0.7 | 0.39587 |
Target: 5'- aUGGccGACAgCGGCAGCauGGCGcCGGCAc -3' miRNA: 3'- gACC--CUGUaGCCGUUG--UCGCuGCCGU- -5' |
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24013 | 5' | -57 | NC_005262.1 | + | 23939 | 0.7 | 0.432679 |
Target: 5'- -gGGcGGCAcCGGCAAgGGCGGCGuGCc -3' miRNA: 3'- gaCC-CUGUaGCCGUUgUCGCUGC-CGu -5' |
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24013 | 5' | -57 | NC_005262.1 | + | 17538 | 0.7 | 0.431735 |
Target: 5'- -cGGGcacgcggucgcgcGCGaggCGGCAGCcGCGGCGGCGc -3' miRNA: 3'- gaCCC-------------UGUa--GCCGUUGuCGCUGCCGU- -5' |
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24013 | 5' | -57 | NC_005262.1 | + | 21668 | 0.69 | 0.471406 |
Target: 5'- --aGGACA-CGcGCAACcugAGCGGCGGCGc -3' miRNA: 3'- gacCCUGUaGC-CGUUG---UCGCUGCCGU- -5' |
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24013 | 5' | -57 | NC_005262.1 | + | 63668 | 0.69 | 0.461556 |
Target: 5'- gCUGGaAUugcCGGCGACGGCGACGacGCAa -3' miRNA: 3'- -GACCcUGua-GCCGUUGUCGCUGC--CGU- -5' |
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24013 | 5' | -57 | NC_005262.1 | + | 45618 | 0.69 | 0.491419 |
Target: 5'- aCUGGcucGACAcCGGCGACAGCuucccggaGACGcGCGa -3' miRNA: 3'- -GACC---CUGUaGCCGUUGUCG--------CUGC-CGU- -5' |
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24013 | 5' | -57 | NC_005262.1 | + | 13500 | 0.69 | 0.451816 |
Target: 5'- gCUGGcGAa---GGCGAaGGCGGCGGCAu -3' miRNA: 3'- -GACC-CUguagCCGUUgUCGCUGCCGU- -5' |
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24013 | 5' | -57 | NC_005262.1 | + | 10854 | 0.69 | 0.491419 |
Target: 5'- -aGGGGg--CGGCAugAGUGAgGGCGc -3' miRNA: 3'- gaCCCUguaGCCGUugUCGCUgCCGU- -5' |
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24013 | 5' | -57 | NC_005262.1 | + | 5049 | 0.69 | 0.481362 |
Target: 5'- -cGGcGCcugAUCGGCGggcaggcccGCGGCGGCGGCGc -3' miRNA: 3'- gaCCcUG---UAGCCGU---------UGUCGCUGCCGU- -5' |
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24013 | 5' | -57 | NC_005262.1 | + | 33906 | 0.69 | 0.481362 |
Target: 5'- -cGGcGGCccgAUCGGUAGCGGCGgugccgagcucGCGGCGg -3' miRNA: 3'- gaCC-CUG---UAGCCGUUGUCGC-----------UGCCGU- -5' |
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24013 | 5' | -57 | NC_005262.1 | + | 14518 | 0.69 | 0.491419 |
Target: 5'- ---aGGCgAUCGGCAACAGC-AUGGCAg -3' miRNA: 3'- gaccCUG-UAGCCGUUGUCGcUGCCGU- -5' |
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24013 | 5' | -57 | NC_005262.1 | + | 19993 | 0.68 | 0.519037 |
Target: 5'- -cGGcGACAUUGGCAagacgaugucuuguGCGGCGACuuugGGCc -3' miRNA: 3'- gaCC-CUGUAGCCGU--------------UGUCGCUG----CCGu -5' |
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24013 | 5' | -57 | NC_005262.1 | + | 63420 | 0.68 | 0.532553 |
Target: 5'- uUGaGGGCGuugaccUCGGCGAC-GCGGCGcGCGu -3' miRNA: 3'- gAC-CCUGU------AGCCGUUGuCGCUGC-CGU- -5' |
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24013 | 5' | -57 | NC_005262.1 | + | 30666 | 0.68 | 0.553585 |
Target: 5'- -cGcGGACAUCGaCAGCGGacgcugGACGGCGc -3' miRNA: 3'- gaC-CCUGUAGCcGUUGUCg-----CUGCCGU- -5' |
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24013 | 5' | -57 | NC_005262.1 | + | 7525 | 0.68 | 0.543035 |
Target: 5'- --cGGGCAgguUCGGCGGC-GCGuCGGCGc -3' miRNA: 3'- gacCCUGU---AGCCGUUGuCGCuGCCGU- -5' |
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24013 | 5' | -57 | NC_005262.1 | + | 39196 | 0.68 | 0.532553 |
Target: 5'- uCUGGGAUGcCGGCAACuuCGAucCGGCc -3' miRNA: 3'- -GACCCUGUaGCCGUUGucGCU--GCCGu -5' |
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24013 | 5' | -57 | NC_005262.1 | + | 32835 | 0.68 | 0.522144 |
Target: 5'- -cGGcGACGUCGGCGACAagGUuuCGGCc -3' miRNA: 3'- gaCC-CUGUAGCCGUUGU--CGcuGCCGu -5' |
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24013 | 5' | -57 | NC_005262.1 | + | 45778 | 0.68 | 0.511815 |
Target: 5'- -cGGcAUcgCGGCGAagGGCGGCGGCGu -3' miRNA: 3'- gaCCcUGuaGCCGUUg-UCGCUGCCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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