miRNA display CGI


Results 41 - 60 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24013 5' -57 NC_005262.1 + 30222 0.68 0.543035
Target:  5'- -cGGcGCuUCGGCGAcCAGCaGCGGCAc -3'
miRNA:   3'- gaCCcUGuAGCCGUU-GUCGcUGCCGU- -5'
24013 5' -57 NC_005262.1 + 7525 0.68 0.543035
Target:  5'- --cGGGCAgguUCGGCGGC-GCGuCGGCGc -3'
miRNA:   3'- gacCCUGU---AGCCGUUGuCGCuGCCGU- -5'
24013 5' -57 NC_005262.1 + 57210 0.68 0.553585
Target:  5'- --cGGACcugccgGUCGGCGGCAucGCGACGcGCGc -3'
miRNA:   3'- gacCCUG------UAGCCGUUGU--CGCUGC-CGU- -5'
24013 5' -57 NC_005262.1 + 30666 0.68 0.553585
Target:  5'- -cGcGGACAUCGaCAGCGGacgcugGACGGCGc -3'
miRNA:   3'- gaC-CCUGUAGCcGUUGUCg-----CUGCCGU- -5'
24013 5' -57 NC_005262.1 + 40805 0.68 0.553585
Target:  5'- -cGGGG-AUCGGCAucuacgggGCuGCGACGGgCAu -3'
miRNA:   3'- gaCCCUgUAGCCGU--------UGuCGCUGCC-GU- -5'
24013 5' -57 NC_005262.1 + 4563 0.68 0.553585
Target:  5'- -cGGcGCAUCucGCGcCAGCGGCGGCGc -3'
miRNA:   3'- gaCCcUGUAGc-CGUuGUCGCUGCCGU- -5'
24013 5' -57 NC_005262.1 + 47207 0.67 0.564194
Target:  5'- aUGGGGCucgCGGCAcugucgccgccGCAGauguucgaGAUGGCAu -3'
miRNA:   3'- gACCCUGua-GCCGU-----------UGUCg-------CUGCCGU- -5'
24013 5' -57 NC_005262.1 + 63670 0.67 0.574857
Target:  5'- -gGGGGCggCGGagccaGACacgcuaccgccGGCGGCGGCGg -3'
miRNA:   3'- gaCCCUGuaGCCg----UUG-----------UCGCUGCCGU- -5'
24013 5' -57 NC_005262.1 + 61313 0.67 0.585565
Target:  5'- --cGGAUAUgGGCAgcaugucgaGCAGCGACGuGCc -3'
miRNA:   3'- gacCCUGUAgCCGU---------UGUCGCUGC-CGu -5'
24013 5' -57 NC_005262.1 + 40359 0.67 0.59631
Target:  5'- gCUGaugucGAuCGUCGGCGACGuCGACGGCc -3'
miRNA:   3'- -GACc----CU-GUAGCCGUUGUcGCUGCCGu -5'
24013 5' -57 NC_005262.1 + 45227 0.67 0.59631
Target:  5'- -cGGGcucggccugaACGcCGGCAACucGGCGAcCGGCAa -3'
miRNA:   3'- gaCCC----------UGUaGCCGUUG--UCGCU-GCCGU- -5'
24013 5' -57 NC_005262.1 + 46688 0.67 0.607085
Target:  5'- -cGGGAUcugUGGCGucuGCGGCGAggaCGGCGc -3'
miRNA:   3'- gaCCCUGua-GCCGU---UGUCGCU---GCCGU- -5'
24013 5' -57 NC_005262.1 + 28528 0.67 0.617881
Target:  5'- -cGGcGACA-CGGCGagcACGGCG-CGGCc -3'
miRNA:   3'- gaCC-CUGUaGCCGU---UGUCGCuGCCGu -5'
24013 5' -57 NC_005262.1 + 51041 0.67 0.617881
Target:  5'- -cGGccuGCGUCGGCuuCAGCucGGCGGCc -3'
miRNA:   3'- gaCCc--UGUAGCCGuuGUCG--CUGCCGu -5'
24013 5' -57 NC_005262.1 + 62671 0.66 0.639498
Target:  5'- gUGGGuuuaGUCcGCc-CGGCGGCGGCAg -3'
miRNA:   3'- gACCCug--UAGcCGuuGUCGCUGCCGU- -5'
24013 5' -57 NC_005262.1 + 56272 0.66 0.639498
Target:  5'- --cGGACAUCGGgcuCGGCGAgcaguCGGCGa -3'
miRNA:   3'- gacCCUGUAGCCguuGUCGCU-----GCCGU- -5'
24013 5' -57 NC_005262.1 + 6983 0.66 0.639498
Target:  5'- gUGGGGCAcgCGGCucgaaaacgcGAUcGCGGcCGGCAu -3'
miRNA:   3'- gACCCUGUa-GCCG----------UUGuCGCU-GCCGU- -5'
24013 5' -57 NC_005262.1 + 49638 0.66 0.639498
Target:  5'- -cGGuGGCcucgcgAUCGGCGGCcugcaaGGCGGCGGCn -3'
miRNA:   3'- gaCC-CUG------UAGCCGUUG------UCGCUGCCGu -5'
24013 5' -57 NC_005262.1 + 29616 0.66 0.647063
Target:  5'- uUGGGAugacccgaacacgcCGcaacCGGCAucgGCAGCGAgCGGCAu -3'
miRNA:   3'- gACCCU--------------GUa---GCCGU---UGUCGCU-GCCGU- -5'
24013 5' -57 NC_005262.1 + 33691 0.66 0.650303
Target:  5'- cCUGcGACGUCggGGCGACuGCGGUGGCc -3'
miRNA:   3'- -GACcCUGUAG--CCGUUGuCGCUGCCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.