miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24013 5' -57 NC_005262.1 + 63670 0.67 0.574857
Target:  5'- -gGGGGCggCGGagccaGACacgcuaccgccGGCGGCGGCGg -3'
miRNA:   3'- gaCCCUGuaGCCg----UUG-----------UCGCUGCCGU- -5'
24013 5' -57 NC_005262.1 + 47207 0.67 0.564194
Target:  5'- aUGGGGCucgCGGCAcugucgccgccGCAGauguucgaGAUGGCAu -3'
miRNA:   3'- gACCCUGua-GCCGU-----------UGUCg-------CUGCCGU- -5'
24013 5' -57 NC_005262.1 + 4563 0.68 0.553585
Target:  5'- -cGGcGCAUCucGCGcCAGCGGCGGCGc -3'
miRNA:   3'- gaCCcUGUAGc-CGUuGUCGCUGCCGU- -5'
24013 5' -57 NC_005262.1 + 40805 0.68 0.553585
Target:  5'- -cGGGG-AUCGGCAucuacgggGCuGCGACGGgCAu -3'
miRNA:   3'- gaCCCUgUAGCCGU--------UGuCGCUGCC-GU- -5'
24013 5' -57 NC_005262.1 + 30666 0.68 0.553585
Target:  5'- -cGcGGACAUCGaCAGCGGacgcugGACGGCGc -3'
miRNA:   3'- gaC-CCUGUAGCcGUUGUCg-----CUGCCGU- -5'
24013 5' -57 NC_005262.1 + 57210 0.68 0.553585
Target:  5'- --cGGACcugccgGUCGGCGGCAucGCGACGcGCGc -3'
miRNA:   3'- gacCCUG------UAGCCGUUGU--CGCUGC-CGU- -5'
24013 5' -57 NC_005262.1 + 7525 0.68 0.543035
Target:  5'- --cGGGCAgguUCGGCGGC-GCGuCGGCGc -3'
miRNA:   3'- gacCCUGU---AGCCGUUGuCGCuGCCGU- -5'
24013 5' -57 NC_005262.1 + 30222 0.68 0.543035
Target:  5'- -cGGcGCuUCGGCGAcCAGCaGCGGCAc -3'
miRNA:   3'- gaCCcUGuAGCCGUU-GUCGcUGCCGU- -5'
24013 5' -57 NC_005262.1 + 63420 0.68 0.532553
Target:  5'- uUGaGGGCGuugaccUCGGCGAC-GCGGCGcGCGu -3'
miRNA:   3'- gAC-CCUGU------AGCCGUUGuCGCUGC-CGU- -5'
24013 5' -57 NC_005262.1 + 61567 0.68 0.532553
Target:  5'- -cGGGACGaggCGGUGACGGUGaacGCGGaCAa -3'
miRNA:   3'- gaCCCUGUa--GCCGUUGUCGC---UGCC-GU- -5'
24013 5' -57 NC_005262.1 + 39196 0.68 0.532553
Target:  5'- uCUGGGAUGcCGGCAACuuCGAucCGGCc -3'
miRNA:   3'- -GACCCUGUaGCCGUUGucGCU--GCCGu -5'
24013 5' -57 NC_005262.1 + 32835 0.68 0.522144
Target:  5'- -cGGcGACGUCGGCGACAagGUuuCGGCc -3'
miRNA:   3'- gaCC-CUGUAGCCGUUGU--CGcuGCCGu -5'
24013 5' -57 NC_005262.1 + 19993 0.68 0.519037
Target:  5'- -cGGcGACAUUGGCAagacgaugucuuguGCGGCGACuuugGGCc -3'
miRNA:   3'- gaCC-CUGUAGCCGU--------------UGUCGCUG----CCGu -5'
24013 5' -57 NC_005262.1 + 45778 0.68 0.511815
Target:  5'- -cGGcAUcgCGGCGAagGGCGGCGGCGu -3'
miRNA:   3'- gaCCcUGuaGCCGUUg-UCGCUGCCGU- -5'
24013 5' -57 NC_005262.1 + 60118 0.68 0.501571
Target:  5'- -cGGGcACGagGGCGcCAGCGucGCGGCGa -3'
miRNA:   3'- gaCCC-UGUagCCGUuGUCGC--UGCCGU- -5'
24013 5' -57 NC_005262.1 + 14518 0.69 0.491419
Target:  5'- ---aGGCgAUCGGCAACAGC-AUGGCAg -3'
miRNA:   3'- gaccCUG-UAGCCGUUGUCGcUGCCGU- -5'
24013 5' -57 NC_005262.1 + 10854 0.69 0.491419
Target:  5'- -aGGGGg--CGGCAugAGUGAgGGCGc -3'
miRNA:   3'- gaCCCUguaGCCGUugUCGCUgCCGU- -5'
24013 5' -57 NC_005262.1 + 45618 0.69 0.491419
Target:  5'- aCUGGcucGACAcCGGCGACAGCuucccggaGACGcGCGa -3'
miRNA:   3'- -GACC---CUGUaGCCGUUGUCG--------CUGC-CGU- -5'
24013 5' -57 NC_005262.1 + 33906 0.69 0.481362
Target:  5'- -cGGcGGCccgAUCGGUAGCGGCGgugccgagcucGCGGCGg -3'
miRNA:   3'- gaCC-CUG---UAGCCGUUGUCGC-----------UGCCGU- -5'
24013 5' -57 NC_005262.1 + 5049 0.69 0.481362
Target:  5'- -cGGcGCcugAUCGGCGggcaggcccGCGGCGGCGGCGc -3'
miRNA:   3'- gaCCcUG---UAGCCGU---------UGUCGCUGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.