Results 61 - 68 of 68 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 24013 | 5' | -57 | NC_005262.1 | + | 32162 | 0.73 | 0.276973 |
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Target: 5'- gUGGaucGACuuccagaaGGCGGCGGCGGCGGCAg -3' miRNA: 3'- gACC---CUGuag-----CCGUUGUCGCUGCCGU- -5' |
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| 24013 | 5' | -57 | NC_005262.1 | + | 21629 | 0.75 | 0.203821 |
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Target: 5'- -cGGaGuGCGaCGGCGACGGCGACGGCc -3' miRNA: 3'- gaCC-C-UGUaGCCGUUGUCGCUGCCGu -5' |
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| 24013 | 5' | -57 | NC_005262.1 | + | 7627 | 0.75 | 0.202226 |
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Target: 5'- --cGGACGUUGGCcgaaugucgacgccGGCGGCGACGGCu -3' miRNA: 3'- gacCCUGUAGCCG--------------UUGUCGCUGCCGu -5' |
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| 24013 | 5' | -57 | NC_005262.1 | + | 35225 | 0.75 | 0.193394 |
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Target: 5'- aUGcGGAgGUCGGCGGC-GCGAuCGGCAg -3' miRNA: 3'- gAC-CCUgUAGCCGUUGuCGCU-GCCGU- -5' |
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| 24013 | 5' | -57 | NC_005262.1 | + | 49675 | 0.76 | 0.180541 |
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Target: 5'- aUGGGGaugGUCGGCGGCGcgcgcaaccugaaccGCGACGGCGu -3' miRNA: 3'- gACCCUg--UAGCCGUUGU---------------CGCUGCCGU- -5' |
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| 24013 | 5' | -57 | NC_005262.1 | + | 24922 | 0.77 | 0.148022 |
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Target: 5'- -aGGGugAUCGGC-ACGGCGcCGGCc -3' miRNA: 3'- gaCCCugUAGCCGuUGUCGCuGCCGu -5' |
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| 24013 | 5' | -57 | NC_005262.1 | + | 49156 | 0.79 | 0.112551 |
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Target: 5'- gUGGGcgugcaggccGCAUCGGCcGCAGCGGCGcGCAc -3' miRNA: 3'- gACCC----------UGUAGCCGuUGUCGCUGC-CGU- -5' |
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| 24013 | 5' | -57 | NC_005262.1 | + | 26117 | 1.08 | 0.000963 |
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Target: 5'- uCUGGGACAUCGGCAACAGCGACGGCAc -3' miRNA: 3'- -GACCCUGUAGCCGUUGUCGCUGCCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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