miRNA display CGI


Results 1 - 20 of 68 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24013 5' -57 NC_005262.1 + 3947 0.66 0.660013
Target:  5'- -aGGGACuGUCGGCcuaccauCAGCGGCacgucacgcgcggGGCGc -3'
miRNA:   3'- gaCCCUG-UAGCCGuu-----GUCGCUG-------------CCGU- -5'
24013 5' -57 NC_005262.1 + 4563 0.68 0.553585
Target:  5'- -cGGcGCAUCucGCGcCAGCGGCGGCGc -3'
miRNA:   3'- gaCCcUGUAGc-CGUuGUCGCUGCCGU- -5'
24013 5' -57 NC_005262.1 + 5049 0.69 0.481362
Target:  5'- -cGGcGCcugAUCGGCGggcaggcccGCGGCGGCGGCGc -3'
miRNA:   3'- gaCCcUG---UAGCCGU---------UGUCGCUGCCGU- -5'
24013 5' -57 NC_005262.1 + 6983 0.66 0.639498
Target:  5'- gUGGGGCAcgCGGCucgaaaacgcGAUcGCGGcCGGCAu -3'
miRNA:   3'- gACCCUGUa-GCCG----------UUGuCGCU-GCCGU- -5'
24013 5' -57 NC_005262.1 + 7525 0.68 0.543035
Target:  5'- --cGGGCAgguUCGGCGGC-GCGuCGGCGc -3'
miRNA:   3'- gacCCUGU---AGCCGUUGuCGCuGCCGU- -5'
24013 5' -57 NC_005262.1 + 7627 0.75 0.202226
Target:  5'- --cGGACGUUGGCcgaaugucgacgccGGCGGCGACGGCu -3'
miRNA:   3'- gacCCUGUAGCCG--------------UUGUCGCUGCCGu -5'
24013 5' -57 NC_005262.1 + 10854 0.69 0.491419
Target:  5'- -aGGGGg--CGGCAugAGUGAgGGCGc -3'
miRNA:   3'- gaCCCUguaGCCGUugUCGCUgCCGU- -5'
24013 5' -57 NC_005262.1 + 11632 0.66 0.661091
Target:  5'- cCUGcacCAUCGGCucgGCGGCGcCGGCGu -3'
miRNA:   3'- -GACccuGUAGCCGu--UGUCGCuGCCGU- -5'
24013 5' -57 NC_005262.1 + 13500 0.69 0.451816
Target:  5'- gCUGGcGAa---GGCGAaGGCGGCGGCAu -3'
miRNA:   3'- -GACC-CUguagCCGUUgUCGCUGCCGU- -5'
24013 5' -57 NC_005262.1 + 14518 0.69 0.491419
Target:  5'- ---aGGCgAUCGGCAACAGC-AUGGCAg -3'
miRNA:   3'- gaccCUG-UAGCCGUUGUCGcUGCCGU- -5'
24013 5' -57 NC_005262.1 + 15979 0.71 0.351972
Target:  5'- gCUGGcGAUcgacgagAUCGGCGuGCAGCG-CGGCAc -3'
miRNA:   3'- -GACC-CUG-------UAGCCGU-UGUCGCuGCCGU- -5'
24013 5' -57 NC_005262.1 + 17538 0.7 0.431735
Target:  5'- -cGGGcacgcggucgcgcGCGaggCGGCAGCcGCGGCGGCGc -3'
miRNA:   3'- gaCCC-------------UGUa--GCCGUUGuCGCUGCCGU- -5'
24013 5' -57 NC_005262.1 + 19180 0.65 0.679365
Target:  5'- uUGGuGACGgcgUGGCuGCAucaguucaaggagcGCGGCGGCGu -3'
miRNA:   3'- gACC-CUGUa--GCCGuUGU--------------CGCUGCCGU- -5'
24013 5' -57 NC_005262.1 + 19993 0.68 0.519037
Target:  5'- -cGGcGACAUUGGCAagacgaugucuuguGCGGCGACuuugGGCc -3'
miRNA:   3'- gaCC-CUGUAGCCGU--------------UGUCGCUG----CCGu -5'
24013 5' -57 NC_005262.1 + 21482 0.73 0.291029
Target:  5'- gCUGGGGCAUCGGCcaugcguacCAGUGGC-GCAc -3'
miRNA:   3'- -GACCCUGUAGCCGuu-------GUCGCUGcCGU- -5'
24013 5' -57 NC_005262.1 + 21629 0.75 0.203821
Target:  5'- -cGGaGuGCGaCGGCGACGGCGACGGCc -3'
miRNA:   3'- gaCC-C-UGUaGCCGUUGUCGCUGCCGu -5'
24013 5' -57 NC_005262.1 + 21668 0.69 0.471406
Target:  5'- --aGGACA-CGcGCAACcugAGCGGCGGCGc -3'
miRNA:   3'- gacCCUGUaGC-CGUUG---UCGCUGCCGU- -5'
24013 5' -57 NC_005262.1 + 22351 0.72 0.320803
Target:  5'- -gGGGACGUaUGGCGACGGCguGAUGcGCAg -3'
miRNA:   3'- gaCCCUGUA-GCCGUUGUCG--CUGC-CGU- -5'
24013 5' -57 NC_005262.1 + 23939 0.7 0.432679
Target:  5'- -gGGcGGCAcCGGCAAgGGCGGCGuGCc -3'
miRNA:   3'- gaCC-CUGUaGCCGUUgUCGCUGC-CGu -5'
24013 5' -57 NC_005262.1 + 23941 0.72 0.336523
Target:  5'- uCUGGGuccaGCAagcUCGGCGAguGUGGCGcGCAg -3'
miRNA:   3'- -GACCC----UGU---AGCCGUUguCGCUGC-CGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.