miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24013 5' -57 NC_005262.1 + 24922 0.77 0.148022
Target:  5'- -aGGGugAUCGGC-ACGGCGcCGGCc -3'
miRNA:   3'- gaCCCugUAGCCGuUGUCGCuGCCGu -5'
24013 5' -57 NC_005262.1 + 26117 1.08 0.000963
Target:  5'- uCUGGGACAUCGGCAACAGCGACGGCAc -3'
miRNA:   3'- -GACCCUGUAGCCGUUGUCGCUGCCGU- -5'
24013 5' -57 NC_005262.1 + 27808 0.66 0.671853
Target:  5'- aCUGGauCAUCGGUAGCgagaAGCG-CGGCc -3'
miRNA:   3'- -GACCcuGUAGCCGUUG----UCGCuGCCGu -5'
24013 5' -57 NC_005262.1 + 28207 0.71 0.344592
Target:  5'- gUGGGGCAcCGaCGACAuCGACGGCGa -3'
miRNA:   3'- gACCCUGUaGCcGUUGUcGCUGCCGU- -5'
24013 5' -57 NC_005262.1 + 28528 0.67 0.617881
Target:  5'- -cGGcGACA-CGGCGagcACGGCG-CGGCc -3'
miRNA:   3'- gaCC-CUGUaGCCGU---UGUCGCuGCCGu -5'
24013 5' -57 NC_005262.1 + 28560 0.71 0.352799
Target:  5'- uCUGGGGCuUCcGCcGCGcgcGCGACGGCAu -3'
miRNA:   3'- -GACCCUGuAGcCGuUGU---CGCUGCCGU- -5'
24013 5' -57 NC_005262.1 + 29616 0.66 0.647063
Target:  5'- uUGGGAugacccgaacacgcCGcaacCGGCAucgGCAGCGAgCGGCAu -3'
miRNA:   3'- gACCCU--------------GUa---GCCGU---UGUCGCU-GCCGU- -5'
24013 5' -57 NC_005262.1 + 30222 0.68 0.543035
Target:  5'- -cGGcGCuUCGGCGAcCAGCaGCGGCAc -3'
miRNA:   3'- gaCCcUGuAGCCGUU-GUCGcUGCCGU- -5'
24013 5' -57 NC_005262.1 + 30569 0.7 0.414023
Target:  5'- --aGGACGaCGGCAGCAagGACGGCAa -3'
miRNA:   3'- gacCCUGUaGCCGUUGUcgCUGCCGU- -5'
24013 5' -57 NC_005262.1 + 30666 0.68 0.553585
Target:  5'- -cGcGGACAUCGaCAGCGGacgcugGACGGCGc -3'
miRNA:   3'- gaC-CCUGUAGCcGUUGUCg-----CUGCCGU- -5'
24013 5' -57 NC_005262.1 + 32162 0.73 0.276973
Target:  5'- gUGGaucGACuuccagaaGGCGGCGGCGGCGGCAg -3'
miRNA:   3'- gACC---CUGuag-----CCGUUGUCGCUGCCGU- -5'
24013 5' -57 NC_005262.1 + 32835 0.68 0.522144
Target:  5'- -cGGcGACGUCGGCGACAagGUuuCGGCc -3'
miRNA:   3'- gaCC-CUGUAGCCGUUGU--CGcuGCCGu -5'
24013 5' -57 NC_005262.1 + 33691 0.66 0.650303
Target:  5'- cCUGcGACGUCggGGCGACuGCGGUGGCc -3'
miRNA:   3'- -GACcCUGUAG--CCGUUGuCGCUGCCGu -5'
24013 5' -57 NC_005262.1 + 33860 0.72 0.298264
Target:  5'- ---uGAgGUCGGUAGCGGCGAuCGGCAu -3'
miRNA:   3'- gaccCUgUAGCCGUUGUCGCU-GCCGU- -5'
24013 5' -57 NC_005262.1 + 33906 0.69 0.481362
Target:  5'- -cGGcGGCccgAUCGGUAGCGGCGgugccgagcucGCGGCGg -3'
miRNA:   3'- gaCC-CUG---UAGCCGUUGUCGC-----------UGCCGU- -5'
24013 5' -57 NC_005262.1 + 35225 0.75 0.193394
Target:  5'- aUGcGGAgGUCGGCGGC-GCGAuCGGCAg -3'
miRNA:   3'- gAC-CCUgUAGCCGUUGuCGCU-GCCGU- -5'
24013 5' -57 NC_005262.1 + 37017 0.72 0.336523
Target:  5'- --cGGACAUCGGCGGCGGUucAUGGCu -3'
miRNA:   3'- gacCCUGUAGCCGUUGUCGc-UGCCGu -5'
24013 5' -57 NC_005262.1 + 39196 0.68 0.532553
Target:  5'- uCUGGGAUGcCGGCAACuuCGAucCGGCc -3'
miRNA:   3'- -GACCCUGUaGCCGUUGucGCU--GCCGu -5'
24013 5' -57 NC_005262.1 + 40359 0.67 0.59631
Target:  5'- gCUGaugucGAuCGUCGGCGACGuCGACGGCc -3'
miRNA:   3'- -GACc----CU-GUAGCCGUUGUcGCUGCCGu -5'
24013 5' -57 NC_005262.1 + 40805 0.68 0.553585
Target:  5'- -cGGGG-AUCGGCAucuacgggGCuGCGACGGgCAu -3'
miRNA:   3'- gaCCCUgUAGCCGU--------UGuCGCUGCC-GU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.