Results 41 - 60 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24013 | 5' | -57 | NC_005262.1 | + | 41402 | 0.72 | 0.320803 |
Target: 5'- uUGGGAUGUCGGCAAUcGCGcCGcGCc -3' miRNA: 3'- gACCCUGUAGCCGUUGuCGCuGC-CGu -5' |
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24013 | 5' | -57 | NC_005262.1 | + | 45227 | 0.67 | 0.59631 |
Target: 5'- -cGGGcucggccugaACGcCGGCAACucGGCGAcCGGCAa -3' miRNA: 3'- gaCCC----------UGUaGCCGUUG--UCGCU-GCCGU- -5' |
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24013 | 5' | -57 | NC_005262.1 | + | 45618 | 0.69 | 0.491419 |
Target: 5'- aCUGGcucGACAcCGGCGACAGCuucccggaGACGcGCGa -3' miRNA: 3'- -GACC---CUGUaGCCGUUGUCG--------CUGC-CGU- -5' |
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24013 | 5' | -57 | NC_005262.1 | + | 45778 | 0.68 | 0.511815 |
Target: 5'- -cGGcAUcgCGGCGAagGGCGGCGGCGu -3' miRNA: 3'- gaCCcUGuaGCCGUUg-UCGCUGCCGU- -5' |
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24013 | 5' | -57 | NC_005262.1 | + | 46322 | 0.71 | 0.344592 |
Target: 5'- aUGGGACGcggaaUCGGCGACGaaagacGCGAUGGaCGc -3' miRNA: 3'- gACCCUGU-----AGCCGUUGU------CGCUGCC-GU- -5' |
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24013 | 5' | -57 | NC_005262.1 | + | 46639 | 0.71 | 0.378239 |
Target: 5'- gUGGG-CGUC-GCGGgAGCGGCGGCc -3' miRNA: 3'- gACCCuGUAGcCGUUgUCGCUGCCGu -5' |
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24013 | 5' | -57 | NC_005262.1 | + | 46650 | 0.7 | 0.39587 |
Target: 5'- aUGGccGACAgCGGCAGCauGGCGcCGGCAc -3' miRNA: 3'- gACC--CUGUaGCCGUUG--UCGCuGCCGU- -5' |
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24013 | 5' | -57 | NC_005262.1 | + | 46688 | 0.67 | 0.607085 |
Target: 5'- -cGGGAUcugUGGCGucuGCGGCGAggaCGGCGc -3' miRNA: 3'- gaCCCUGua-GCCGU---UGUCGCU---GCCGU- -5' |
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24013 | 5' | -57 | NC_005262.1 | + | 47207 | 0.67 | 0.564194 |
Target: 5'- aUGGGGCucgCGGCAcugucgccgccGCAGauguucgaGAUGGCAu -3' miRNA: 3'- gACCCUGua-GCCGU-----------UGUCg-------CUGCCGU- -5' |
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24013 | 5' | -57 | NC_005262.1 | + | 47741 | 0.66 | 0.661091 |
Target: 5'- uCUGGuGCGccgcCGGCcGCGGCGAaccCGGCAu -3' miRNA: 3'- -GACCcUGUa---GCCGuUGUCGCU---GCCGU- -5' |
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24013 | 5' | -57 | NC_005262.1 | + | 48485 | 0.72 | 0.305638 |
Target: 5'- gUGGG-CAcgGGCGGC-GCGACGGCAg -3' miRNA: 3'- gACCCuGUagCCGUUGuCGCUGCCGU- -5' |
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24013 | 5' | -57 | NC_005262.1 | + | 49156 | 0.79 | 0.112551 |
Target: 5'- gUGGGcgugcaggccGCAUCGGCcGCAGCGGCGcGCAc -3' miRNA: 3'- gACCC----------UGUAGCCGuUGUCGCUGC-CGU- -5' |
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24013 | 5' | -57 | NC_005262.1 | + | 49638 | 0.66 | 0.639498 |
Target: 5'- -cGGuGGCcucgcgAUCGGCGGCcugcaaGGCGGCGGCn -3' miRNA: 3'- gaCC-CUG------UAGCCGUUG------UCGCUGCCGu -5' |
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24013 | 5' | -57 | NC_005262.1 | + | 49675 | 0.76 | 0.180541 |
Target: 5'- aUGGGGaugGUCGGCGGCGcgcgcaaccugaaccGCGACGGCGu -3' miRNA: 3'- gACCCUg--UAGCCGUUGU---------------CGCUGCCGU- -5' |
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24013 | 5' | -57 | NC_005262.1 | + | 49869 | 0.73 | 0.283932 |
Target: 5'- -aGGGGCGUcCGGCGcgGCAGCGGCcggagccucgGGCGc -3' miRNA: 3'- gaCCCUGUA-GCCGU--UGUCGCUG----------CCGU- -5' |
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24013 | 5' | -57 | NC_005262.1 | + | 51041 | 0.67 | 0.617881 |
Target: 5'- -cGGccuGCGUCGGCuuCAGCucGGCGGCc -3' miRNA: 3'- gaCCc--UGUAGCCGuuGUCG--CUGCCGu -5' |
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24013 | 5' | -57 | NC_005262.1 | + | 52751 | 0.66 | 0.661091 |
Target: 5'- gCUGGGGCGcCaGCGAgAucGCGAaCGGCAu -3' miRNA: 3'- -GACCCUGUaGcCGUUgU--CGCU-GCCGU- -5' |
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24013 | 5' | -57 | NC_005262.1 | + | 56272 | 0.66 | 0.639498 |
Target: 5'- --cGGACAUCGGgcuCGGCGAgcaguCGGCGa -3' miRNA: 3'- gacCCUGUAGCCguuGUCGCU-----GCCGU- -5' |
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24013 | 5' | -57 | NC_005262.1 | + | 57210 | 0.68 | 0.553585 |
Target: 5'- --cGGACcugccgGUCGGCGGCAucGCGACGcGCGc -3' miRNA: 3'- gacCCUG------UAGCCGUUGU--CGCUGC-CGU- -5' |
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24013 | 5' | -57 | NC_005262.1 | + | 59738 | 0.66 | 0.670778 |
Target: 5'- -cGGGuuGUCGGCGAcCAGCGcgaggagagacugGCGcGCGa -3' miRNA: 3'- gaCCCugUAGCCGUU-GUCGC-------------UGC-CGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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