miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24013 5' -57 NC_005262.1 + 63670 0.67 0.574857
Target:  5'- -gGGGGCggCGGagccaGACacgcuaccgccGGCGGCGGCGg -3'
miRNA:   3'- gaCCCUGuaGCCg----UUG-----------UCGCUGCCGU- -5'
24013 5' -57 NC_005262.1 + 63668 0.69 0.461556
Target:  5'- gCUGGaAUugcCGGCGACGGCGACGacGCAa -3'
miRNA:   3'- -GACCcUGua-GCCGUUGUCGCUGC--CGU- -5'
24013 5' -57 NC_005262.1 + 63420 0.68 0.532553
Target:  5'- uUGaGGGCGuugaccUCGGCGAC-GCGGCGcGCGu -3'
miRNA:   3'- gAC-CCUGU------AGCCGUUGuCGCUGC-CGU- -5'
24013 5' -57 NC_005262.1 + 62671 0.66 0.639498
Target:  5'- gUGGGuuuaGUCcGCc-CGGCGGCGGCAg -3'
miRNA:   3'- gACCCug--UAGcCGuuGUCGCUGCCGU- -5'
24013 5' -57 NC_005262.1 + 61567 0.68 0.532553
Target:  5'- -cGGGACGaggCGGUGACGGUGaacGCGGaCAa -3'
miRNA:   3'- gaCCCUGUa--GCCGUUGUCGC---UGCC-GU- -5'
24013 5' -57 NC_005262.1 + 61313 0.67 0.585565
Target:  5'- --cGGAUAUgGGCAgcaugucgaGCAGCGACGuGCc -3'
miRNA:   3'- gacCCUGUAgCCGU---------UGUCGCUGC-CGu -5'
24013 5' -57 NC_005262.1 + 61128 0.66 0.660013
Target:  5'- -gGGGACGguguacgacgcgcUgGcGCAGCAgaucGCGGCGGCGg -3'
miRNA:   3'- gaCCCUGU-------------AgC-CGUUGU----CGCUGCCGU- -5'
24013 5' -57 NC_005262.1 + 60118 0.68 0.501571
Target:  5'- -cGGGcACGagGGCGcCAGCGucGCGGCGa -3'
miRNA:   3'- gaCCC-UGUagCCGUuGUCGC--UGCCGU- -5'
24013 5' -57 NC_005262.1 + 59738 0.66 0.670778
Target:  5'- -cGGGuuGUCGGCGAcCAGCGcgaggagagacugGCGcGCGa -3'
miRNA:   3'- gaCCCugUAGCCGUU-GUCGC-------------UGC-CGU- -5'
24013 5' -57 NC_005262.1 + 57210 0.68 0.553585
Target:  5'- --cGGACcugccgGUCGGCGGCAucGCGACGcGCGc -3'
miRNA:   3'- gacCCUG------UAGCCGUUGU--CGCUGC-CGU- -5'
24013 5' -57 NC_005262.1 + 56272 0.66 0.639498
Target:  5'- --cGGACAUCGGgcuCGGCGAgcaguCGGCGa -3'
miRNA:   3'- gacCCUGUAGCCguuGUCGCU-----GCCGU- -5'
24013 5' -57 NC_005262.1 + 52751 0.66 0.661091
Target:  5'- gCUGGGGCGcCaGCGAgAucGCGAaCGGCAu -3'
miRNA:   3'- -GACCCUGUaGcCGUUgU--CGCU-GCCGU- -5'
24013 5' -57 NC_005262.1 + 51041 0.67 0.617881
Target:  5'- -cGGccuGCGUCGGCuuCAGCucGGCGGCc -3'
miRNA:   3'- gaCCc--UGUAGCCGuuGUCG--CUGCCGu -5'
24013 5' -57 NC_005262.1 + 49869 0.73 0.283932
Target:  5'- -aGGGGCGUcCGGCGcgGCAGCGGCcggagccucgGGCGc -3'
miRNA:   3'- gaCCCUGUA-GCCGU--UGUCGCUG----------CCGU- -5'
24013 5' -57 NC_005262.1 + 49675 0.76 0.180541
Target:  5'- aUGGGGaugGUCGGCGGCGcgcgcaaccugaaccGCGACGGCGu -3'
miRNA:   3'- gACCCUg--UAGCCGUUGU---------------CGCUGCCGU- -5'
24013 5' -57 NC_005262.1 + 49638 0.66 0.639498
Target:  5'- -cGGuGGCcucgcgAUCGGCGGCcugcaaGGCGGCGGCn -3'
miRNA:   3'- gaCC-CUG------UAGCCGUUG------UCGCUGCCGu -5'
24013 5' -57 NC_005262.1 + 49156 0.79 0.112551
Target:  5'- gUGGGcgugcaggccGCAUCGGCcGCAGCGGCGcGCAc -3'
miRNA:   3'- gACCC----------UGUAGCCGuUGUCGCUGC-CGU- -5'
24013 5' -57 NC_005262.1 + 48485 0.72 0.305638
Target:  5'- gUGGG-CAcgGGCGGC-GCGACGGCAg -3'
miRNA:   3'- gACCCuGUagCCGUUGuCGCUGCCGU- -5'
24013 5' -57 NC_005262.1 + 47741 0.66 0.661091
Target:  5'- uCUGGuGCGccgcCGGCcGCGGCGAaccCGGCAu -3'
miRNA:   3'- -GACCcUGUa---GCCGuUGUCGCU---GCCGU- -5'
24013 5' -57 NC_005262.1 + 47207 0.67 0.564194
Target:  5'- aUGGGGCucgCGGCAcugucgccgccGCAGauguucgaGAUGGCAu -3'
miRNA:   3'- gACCCUGua-GCCGU-----------UGUCg-------CUGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.