Results 21 - 40 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24013 | 5' | -57 | NC_005262.1 | + | 46688 | 0.67 | 0.607085 |
Target: 5'- -cGGGAUcugUGGCGucuGCGGCGAggaCGGCGc -3' miRNA: 3'- gaCCCUGua-GCCGU---UGUCGCU---GCCGU- -5' |
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24013 | 5' | -57 | NC_005262.1 | + | 46650 | 0.7 | 0.39587 |
Target: 5'- aUGGccGACAgCGGCAGCauGGCGcCGGCAc -3' miRNA: 3'- gACC--CUGUaGCCGUUG--UCGCuGCCGU- -5' |
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24013 | 5' | -57 | NC_005262.1 | + | 46639 | 0.71 | 0.378239 |
Target: 5'- gUGGG-CGUC-GCGGgAGCGGCGGCc -3' miRNA: 3'- gACCCuGUAGcCGUUgUCGCUGCCGu -5' |
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24013 | 5' | -57 | NC_005262.1 | + | 46322 | 0.71 | 0.344592 |
Target: 5'- aUGGGACGcggaaUCGGCGACGaaagacGCGAUGGaCGc -3' miRNA: 3'- gACCCUGU-----AGCCGUUGU------CGCUGCC-GU- -5' |
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24013 | 5' | -57 | NC_005262.1 | + | 45778 | 0.68 | 0.511815 |
Target: 5'- -cGGcAUcgCGGCGAagGGCGGCGGCGu -3' miRNA: 3'- gaCCcUGuaGCCGUUg-UCGCUGCCGU- -5' |
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24013 | 5' | -57 | NC_005262.1 | + | 45618 | 0.69 | 0.491419 |
Target: 5'- aCUGGcucGACAcCGGCGACAGCuucccggaGACGcGCGa -3' miRNA: 3'- -GACC---CUGUaGCCGUUGUCG--------CUGC-CGU- -5' |
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24013 | 5' | -57 | NC_005262.1 | + | 45227 | 0.67 | 0.59631 |
Target: 5'- -cGGGcucggccugaACGcCGGCAACucGGCGAcCGGCAa -3' miRNA: 3'- gaCCC----------UGUaGCCGUUG--UCGCU-GCCGU- -5' |
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24013 | 5' | -57 | NC_005262.1 | + | 41402 | 0.72 | 0.320803 |
Target: 5'- uUGGGAUGUCGGCAAUcGCGcCGcGCc -3' miRNA: 3'- gACCCUGUAGCCGUUGuCGCuGC-CGu -5' |
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24013 | 5' | -57 | NC_005262.1 | + | 40805 | 0.68 | 0.553585 |
Target: 5'- -cGGGG-AUCGGCAucuacgggGCuGCGACGGgCAu -3' miRNA: 3'- gaCCCUgUAGCCGU--------UGuCGCUGCC-GU- -5' |
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24013 | 5' | -57 | NC_005262.1 | + | 40359 | 0.67 | 0.59631 |
Target: 5'- gCUGaugucGAuCGUCGGCGACGuCGACGGCc -3' miRNA: 3'- -GACc----CU-GUAGCCGUUGUcGCUGCCGu -5' |
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24013 | 5' | -57 | NC_005262.1 | + | 39196 | 0.68 | 0.532553 |
Target: 5'- uCUGGGAUGcCGGCAACuuCGAucCGGCc -3' miRNA: 3'- -GACCCUGUaGCCGUUGucGCU--GCCGu -5' |
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24013 | 5' | -57 | NC_005262.1 | + | 37017 | 0.72 | 0.336523 |
Target: 5'- --cGGACAUCGGCGGCGGUucAUGGCu -3' miRNA: 3'- gacCCUGUAGCCGUUGUCGc-UGCCGu -5' |
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24013 | 5' | -57 | NC_005262.1 | + | 35225 | 0.75 | 0.193394 |
Target: 5'- aUGcGGAgGUCGGCGGC-GCGAuCGGCAg -3' miRNA: 3'- gAC-CCUgUAGCCGUUGuCGCU-GCCGU- -5' |
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24013 | 5' | -57 | NC_005262.1 | + | 33906 | 0.69 | 0.481362 |
Target: 5'- -cGGcGGCccgAUCGGUAGCGGCGgugccgagcucGCGGCGg -3' miRNA: 3'- gaCC-CUG---UAGCCGUUGUCGC-----------UGCCGU- -5' |
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24013 | 5' | -57 | NC_005262.1 | + | 33860 | 0.72 | 0.298264 |
Target: 5'- ---uGAgGUCGGUAGCGGCGAuCGGCAu -3' miRNA: 3'- gaccCUgUAGCCGUUGUCGCU-GCCGU- -5' |
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24013 | 5' | -57 | NC_005262.1 | + | 33691 | 0.66 | 0.650303 |
Target: 5'- cCUGcGACGUCggGGCGACuGCGGUGGCc -3' miRNA: 3'- -GACcCUGUAG--CCGUUGuCGCUGCCGu -5' |
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24013 | 5' | -57 | NC_005262.1 | + | 32835 | 0.68 | 0.522144 |
Target: 5'- -cGGcGACGUCGGCGACAagGUuuCGGCc -3' miRNA: 3'- gaCC-CUGUAGCCGUUGU--CGcuGCCGu -5' |
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24013 | 5' | -57 | NC_005262.1 | + | 32162 | 0.73 | 0.276973 |
Target: 5'- gUGGaucGACuuccagaaGGCGGCGGCGGCGGCAg -3' miRNA: 3'- gACC---CUGuag-----CCGUUGUCGCUGCCGU- -5' |
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24013 | 5' | -57 | NC_005262.1 | + | 30666 | 0.68 | 0.553585 |
Target: 5'- -cGcGGACAUCGaCAGCGGacgcugGACGGCGc -3' miRNA: 3'- gaC-CCUGUAGCcGUUGUCg-----CUGCCGU- -5' |
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24013 | 5' | -57 | NC_005262.1 | + | 30569 | 0.7 | 0.414023 |
Target: 5'- --aGGACGaCGGCAGCAagGACGGCAa -3' miRNA: 3'- gacCCUGUaGCCGUUGUcgCUGCCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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