miRNA display CGI


Results 1 - 20 of 68 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24013 5' -57 NC_005262.1 + 21668 0.69 0.471406
Target:  5'- --aGGACA-CGcGCAACcugAGCGGCGGCGc -3'
miRNA:   3'- gacCCUGUaGC-CGUUG---UCGCUGCCGU- -5'
24013 5' -57 NC_005262.1 + 46322 0.71 0.344592
Target:  5'- aUGGGACGcggaaUCGGCGACGaaagacGCGAUGGaCGc -3'
miRNA:   3'- gACCCUGU-----AGCCGUUGU------CGCUGCC-GU- -5'
24013 5' -57 NC_005262.1 + 15979 0.71 0.351972
Target:  5'- gCUGGcGAUcgacgagAUCGGCGuGCAGCG-CGGCAc -3'
miRNA:   3'- -GACC-CUG-------UAGCCGU-UGUCGCuGCCGU- -5'
24013 5' -57 NC_005262.1 + 28560 0.71 0.352799
Target:  5'- uCUGGGGCuUCcGCcGCGcgcGCGACGGCAu -3'
miRNA:   3'- -GACCCUGuAGcCGuUGU---CGCUGCCGU- -5'
24013 5' -57 NC_005262.1 + 46650 0.7 0.39587
Target:  5'- aUGGccGACAgCGGCAGCauGGCGcCGGCAc -3'
miRNA:   3'- gACC--CUGUaGCCGUUG--UCGCuGCCGU- -5'
24013 5' -57 NC_005262.1 + 30569 0.7 0.414023
Target:  5'- --aGGACGaCGGCAGCAagGACGGCAa -3'
miRNA:   3'- gacCCUGUaGCCGUUGUcgCUGCCGU- -5'
24013 5' -57 NC_005262.1 + 17538 0.7 0.431735
Target:  5'- -cGGGcacgcggucgcgcGCGaggCGGCAGCcGCGGCGGCGc -3'
miRNA:   3'- gaCCC-------------UGUa--GCCGUUGuCGCUGCCGU- -5'
24013 5' -57 NC_005262.1 + 13500 0.69 0.451816
Target:  5'- gCUGGcGAa---GGCGAaGGCGGCGGCAu -3'
miRNA:   3'- -GACC-CUguagCCGUUgUCGCUGCCGU- -5'
24013 5' -57 NC_005262.1 + 63668 0.69 0.461556
Target:  5'- gCUGGaAUugcCGGCGACGGCGACGacGCAa -3'
miRNA:   3'- -GACCcUGua-GCCGUUGUCGCUGC--CGU- -5'
24013 5' -57 NC_005262.1 + 28207 0.71 0.344592
Target:  5'- gUGGGGCAcCGaCGACAuCGACGGCGa -3'
miRNA:   3'- gACCCUGUaGCcGUUGUcGCUGCCGU- -5'
24013 5' -57 NC_005262.1 + 37017 0.72 0.336523
Target:  5'- --cGGACAUCGGCGGCGGUucAUGGCu -3'
miRNA:   3'- gacCCUGUAGCCGUUGUCGc-UGCCGu -5'
24013 5' -57 NC_005262.1 + 23941 0.72 0.336523
Target:  5'- uCUGGGuccaGCAagcUCGGCGAguGUGGCGcGCAg -3'
miRNA:   3'- -GACCC----UGU---AGCCGUUguCGCUGC-CGU- -5'
24013 5' -57 NC_005262.1 + 49156 0.79 0.112551
Target:  5'- gUGGGcgugcaggccGCAUCGGCcGCAGCGGCGcGCAc -3'
miRNA:   3'- gACCC----------UGUAGCCGuUGUCGCUGC-CGU- -5'
24013 5' -57 NC_005262.1 + 49675 0.76 0.180541
Target:  5'- aUGGGGaugGUCGGCGGCGcgcgcaaccugaaccGCGACGGCGu -3'
miRNA:   3'- gACCCUg--UAGCCGUUGU---------------CGCUGCCGU- -5'
24013 5' -57 NC_005262.1 + 35225 0.75 0.193394
Target:  5'- aUGcGGAgGUCGGCGGC-GCGAuCGGCAg -3'
miRNA:   3'- gAC-CCUgUAGCCGUUGuCGCU-GCCGU- -5'
24013 5' -57 NC_005262.1 + 7627 0.75 0.202226
Target:  5'- --cGGACGUUGGCcgaaugucgacgccGGCGGCGACGGCu -3'
miRNA:   3'- gacCCUGUAGCCG--------------UUGUCGCUGCCGu -5'
24013 5' -57 NC_005262.1 + 21629 0.75 0.203821
Target:  5'- -cGGaGuGCGaCGGCGACGGCGACGGCc -3'
miRNA:   3'- gaCC-C-UGUaGCCGUUGUCGCUGCCGu -5'
24013 5' -57 NC_005262.1 + 32162 0.73 0.276973
Target:  5'- gUGGaucGACuuccagaaGGCGGCGGCGGCGGCAg -3'
miRNA:   3'- gACC---CUGuag-----CCGUUGUCGCUGCCGU- -5'
24013 5' -57 NC_005262.1 + 21482 0.73 0.291029
Target:  5'- gCUGGGGCAUCGGCcaugcguacCAGUGGC-GCAc -3'
miRNA:   3'- -GACCCUGUAGCCGuu-------GUCGCUGcCGU- -5'
24013 5' -57 NC_005262.1 + 48485 0.72 0.305638
Target:  5'- gUGGG-CAcgGGCGGC-GCGACGGCAg -3'
miRNA:   3'- gACCCuGUagCCGUUGuCGCUGCCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.