miRNA display CGI


Results 41 - 60 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24013 5' -57 NC_005262.1 + 33906 0.69 0.481362
Target:  5'- -cGGcGGCccgAUCGGUAGCGGCGgugccgagcucGCGGCGg -3'
miRNA:   3'- gaCC-CUG---UAGCCGUUGUCGC-----------UGCCGU- -5'
24013 5' -57 NC_005262.1 + 21668 0.69 0.471406
Target:  5'- --aGGACA-CGcGCAACcugAGCGGCGGCGc -3'
miRNA:   3'- gacCCUGUaGC-CGUUG---UCGCUGCCGU- -5'
24013 5' -57 NC_005262.1 + 63668 0.69 0.461556
Target:  5'- gCUGGaAUugcCGGCGACGGCGACGacGCAa -3'
miRNA:   3'- -GACCcUGua-GCCGUUGUCGCUGC--CGU- -5'
24013 5' -57 NC_005262.1 + 13500 0.69 0.451816
Target:  5'- gCUGGcGAa---GGCGAaGGCGGCGGCAu -3'
miRNA:   3'- -GACC-CUguagCCGUUgUCGCUGCCGU- -5'
24013 5' -57 NC_005262.1 + 17538 0.7 0.431735
Target:  5'- -cGGGcacgcggucgcgcGCGaggCGGCAGCcGCGGCGGCGc -3'
miRNA:   3'- gaCCC-------------UGUa--GCCGUUGuCGCUGCCGU- -5'
24013 5' -57 NC_005262.1 + 30569 0.7 0.414023
Target:  5'- --aGGACGaCGGCAGCAagGACGGCAa -3'
miRNA:   3'- gacCCUGUaGCCGUUGUcgCUGCCGU- -5'
24013 5' -57 NC_005262.1 + 46650 0.7 0.39587
Target:  5'- aUGGccGACAgCGGCAGCauGGCGcCGGCAc -3'
miRNA:   3'- gACC--CUGUaGCCGUUG--UCGCuGCCGU- -5'
24013 5' -57 NC_005262.1 + 28560 0.71 0.352799
Target:  5'- uCUGGGGCuUCcGCcGCGcgcGCGACGGCAu -3'
miRNA:   3'- -GACCCUGuAGcCGuUGU---CGCUGCCGU- -5'
24013 5' -57 NC_005262.1 + 15979 0.71 0.351972
Target:  5'- gCUGGcGAUcgacgagAUCGGCGuGCAGCG-CGGCAc -3'
miRNA:   3'- -GACC-CUG-------UAGCCGU-UGUCGCuGCCGU- -5'
24013 5' -57 NC_005262.1 + 46688 0.67 0.607085
Target:  5'- -cGGGAUcugUGGCGucuGCGGCGAggaCGGCGc -3'
miRNA:   3'- gaCCCUGua-GCCGU---UGUCGCU---GCCGU- -5'
24013 5' -57 NC_005262.1 + 63670 0.67 0.574857
Target:  5'- -gGGGGCggCGGagccaGACacgcuaccgccGGCGGCGGCGg -3'
miRNA:   3'- gaCCCUGuaGCCg----UUG-----------UCGCUGCCGU- -5'
24013 5' -57 NC_005262.1 + 30222 0.68 0.543035
Target:  5'- -cGGcGCuUCGGCGAcCAGCaGCGGCAc -3'
miRNA:   3'- gaCCcUGuAGCCGUU-GUCGcUGCCGU- -5'
24013 5' -57 NC_005262.1 + 63420 0.68 0.532553
Target:  5'- uUGaGGGCGuugaccUCGGCGAC-GCGGCGcGCGu -3'
miRNA:   3'- gAC-CCUGU------AGCCGUUGuCGCUGC-CGU- -5'
24013 5' -57 NC_005262.1 + 51041 0.67 0.617881
Target:  5'- -cGGccuGCGUCGGCuuCAGCucGGCGGCc -3'
miRNA:   3'- gaCCc--UGUAGCCGuuGUCG--CUGCCGu -5'
24013 5' -57 NC_005262.1 + 28528 0.67 0.617881
Target:  5'- -cGGcGACA-CGGCGagcACGGCG-CGGCc -3'
miRNA:   3'- gaCC-CUGUaGCCGU---UGUCGCuGCCGu -5'
24013 5' -57 NC_005262.1 + 6983 0.66 0.639498
Target:  5'- gUGGGGCAcgCGGCucgaaaacgcGAUcGCGGcCGGCAu -3'
miRNA:   3'- gACCCUGUa-GCCG----------UUGuCGCU-GCCGU- -5'
24013 5' -57 NC_005262.1 + 33691 0.66 0.650303
Target:  5'- cCUGcGACGUCggGGCGACuGCGGUGGCc -3'
miRNA:   3'- -GACcCUGUAG--CCGUUGuCGCUGCCGu -5'
24013 5' -57 NC_005262.1 + 3947 0.66 0.660013
Target:  5'- -aGGGACuGUCGGCcuaccauCAGCGGCacgucacgcgcggGGCGc -3'
miRNA:   3'- gaCCCUG-UAGCCGuu-----GUCGCUG-------------CCGU- -5'
24013 5' -57 NC_005262.1 + 59738 0.66 0.670778
Target:  5'- -cGGGuuGUCGGCGAcCAGCGcgaggagagacugGCGcGCGa -3'
miRNA:   3'- gaCCCugUAGCCGUU-GUCGC-------------UGC-CGU- -5'
24013 5' -57 NC_005262.1 + 24922 0.77 0.148022
Target:  5'- -aGGGugAUCGGC-ACGGCGcCGGCc -3'
miRNA:   3'- gaCCCugUAGCCGuUGUCGCuGCCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.