miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24013 5' -57 NC_005262.1 + 19180 0.65 0.679365
Target:  5'- uUGGuGACGgcgUGGCuGCAucaguucaaggagcGCGGCGGCGu -3'
miRNA:   3'- gACC-CUGUa--GCCGuUGU--------------CGCUGCCGU- -5'
24013 5' -57 NC_005262.1 + 19993 0.68 0.519037
Target:  5'- -cGGcGACAUUGGCAagacgaugucuuguGCGGCGACuuugGGCc -3'
miRNA:   3'- gaCC-CUGUAGCCGU--------------UGUCGCUG----CCGu -5'
24013 5' -57 NC_005262.1 + 63670 0.67 0.574857
Target:  5'- -gGGGGCggCGGagccaGACacgcuaccgccGGCGGCGGCGg -3'
miRNA:   3'- gaCCCUGuaGCCg----UUG-----------UCGCUGCCGU- -5'
24013 5' -57 NC_005262.1 + 46688 0.67 0.607085
Target:  5'- -cGGGAUcugUGGCGucuGCGGCGAggaCGGCGc -3'
miRNA:   3'- gaCCCUGua-GCCGU---UGUCGCU---GCCGU- -5'
24013 5' -57 NC_005262.1 + 28528 0.67 0.617881
Target:  5'- -cGGcGACA-CGGCGagcACGGCG-CGGCc -3'
miRNA:   3'- gaCC-CUGUaGCCGU---UGUCGCuGCCGu -5'
24013 5' -57 NC_005262.1 + 6983 0.66 0.639498
Target:  5'- gUGGGGCAcgCGGCucgaaaacgcGAUcGCGGcCGGCAu -3'
miRNA:   3'- gACCCUGUa-GCCG----------UUGuCGCU-GCCGU- -5'
24013 5' -57 NC_005262.1 + 49869 0.73 0.283932
Target:  5'- -aGGGGCGUcCGGCGcgGCAGCGGCcggagccucgGGCGc -3'
miRNA:   3'- gaCCCUGUA-GCCGU--UGUCGCUG----------CCGU- -5'
24013 5' -57 NC_005262.1 + 33860 0.72 0.298264
Target:  5'- ---uGAgGUCGGUAGCGGCGAuCGGCAu -3'
miRNA:   3'- gaccCUgUAGCCGUUGUCGCU-GCCGU- -5'
24013 5' -57 NC_005262.1 + 46639 0.71 0.378239
Target:  5'- gUGGG-CGUC-GCGGgAGCGGCGGCc -3'
miRNA:   3'- gACCCuGUAGcCGUUgUCGCUGCCGu -5'
24013 5' -57 NC_005262.1 + 63420 0.68 0.532553
Target:  5'- uUGaGGGCGuugaccUCGGCGAC-GCGGCGcGCGu -3'
miRNA:   3'- gAC-CCUGU------AGCCGUUGuCGCUGC-CGU- -5'
24013 5' -57 NC_005262.1 + 51041 0.67 0.617881
Target:  5'- -cGGccuGCGUCGGCuuCAGCucGGCGGCc -3'
miRNA:   3'- gaCCc--UGUAGCCGuuGUCG--CUGCCGu -5'
24013 5' -57 NC_005262.1 + 59738 0.66 0.670778
Target:  5'- -cGGGuuGUCGGCGAcCAGCGcgaggagagacugGCGcGCGa -3'
miRNA:   3'- gaCCCugUAGCCGUU-GUCGC-------------UGC-CGU- -5'
24013 5' -57 NC_005262.1 + 41402 0.72 0.320803
Target:  5'- uUGGGAUGUCGGCAAUcGCGcCGcGCc -3'
miRNA:   3'- gACCCUGUAGCCGUUGuCGCuGC-CGu -5'
24013 5' -57 NC_005262.1 + 3947 0.66 0.660013
Target:  5'- -aGGGACuGUCGGCcuaccauCAGCGGCacgucacgcgcggGGCGc -3'
miRNA:   3'- gaCCCUG-UAGCCGuu-----GUCGCUG-------------CCGU- -5'
24013 5' -57 NC_005262.1 + 30222 0.68 0.543035
Target:  5'- -cGGcGCuUCGGCGAcCAGCaGCGGCAc -3'
miRNA:   3'- gaCCcUGuAGCCGUU-GUCGcUGCCGU- -5'
24013 5' -57 NC_005262.1 + 22351 0.72 0.320803
Target:  5'- -gGGGACGUaUGGCGACGGCguGAUGcGCAg -3'
miRNA:   3'- gaCCCUGUA-GCCGUUGUCG--CUGC-CGU- -5'
24013 5' -57 NC_005262.1 + 24922 0.77 0.148022
Target:  5'- -aGGGugAUCGGC-ACGGCGcCGGCc -3'
miRNA:   3'- gaCCCugUAGCCGuUGUCGCuGCCGu -5'
24013 5' -57 NC_005262.1 + 33691 0.66 0.650303
Target:  5'- cCUGcGACGUCggGGCGACuGCGGUGGCc -3'
miRNA:   3'- -GACcCUGUAG--CCGUUGuCGCUGCCGu -5'
24013 5' -57 NC_005262.1 + 23939 0.7 0.432679
Target:  5'- -gGGcGGCAcCGGCAAgGGCGGCGuGCc -3'
miRNA:   3'- gaCC-CUGUaGCCGUUgUCGCUGC-CGu -5'
24013 5' -57 NC_005262.1 + 28560 0.71 0.352799
Target:  5'- uCUGGGGCuUCcGCcGCGcgcGCGACGGCAu -3'
miRNA:   3'- -GACCCUGuAGcCGuUGU---CGCUGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.