miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24013 5' -57 NC_005262.1 + 32835 0.68 0.522144
Target:  5'- -cGGcGACGUCGGCGACAagGUuuCGGCc -3'
miRNA:   3'- gaCC-CUGUAGCCGUUGU--CGcuGCCGu -5'
24013 5' -57 NC_005262.1 + 39196 0.68 0.532553
Target:  5'- uCUGGGAUGcCGGCAACuuCGAucCGGCc -3'
miRNA:   3'- -GACCCUGUaGCCGUUGucGCU--GCCGu -5'
24013 5' -57 NC_005262.1 + 61567 0.68 0.532553
Target:  5'- -cGGGACGaggCGGUGACGGUGaacGCGGaCAa -3'
miRNA:   3'- gaCCCUGUa--GCCGUUGUCGC---UGCC-GU- -5'
24013 5' -57 NC_005262.1 + 49638 0.66 0.639498
Target:  5'- -cGGuGGCcucgcgAUCGGCGGCcugcaaGGCGGCGGCn -3'
miRNA:   3'- gaCC-CUG------UAGCCGUUG------UCGCUGCCGu -5'
24013 5' -57 NC_005262.1 + 45227 0.67 0.59631
Target:  5'- -cGGGcucggccugaACGcCGGCAACucGGCGAcCGGCAa -3'
miRNA:   3'- gaCCC----------UGUaGCCGUUG--UCGCU-GCCGU- -5'
24013 5' -57 NC_005262.1 + 60118 0.68 0.501571
Target:  5'- -cGGGcACGagGGCGcCAGCGucGCGGCGa -3'
miRNA:   3'- gaCCC-UGUagCCGUuGUCGC--UGCCGU- -5'
24013 5' -57 NC_005262.1 + 45618 0.69 0.491419
Target:  5'- aCUGGcucGACAcCGGCGACAGCuucccggaGACGcGCGa -3'
miRNA:   3'- -GACC---CUGUaGCCGUUGUCG--------CUGC-CGU- -5'
24013 5' -57 NC_005262.1 + 21629 0.75 0.203821
Target:  5'- -cGGaGuGCGaCGGCGACGGCGACGGCc -3'
miRNA:   3'- gaCC-C-UGUaGCCGUUGUCGCUGCCGu -5'
24013 5' -57 NC_005262.1 + 32162 0.73 0.276973
Target:  5'- gUGGaucGACuuccagaaGGCGGCGGCGGCGGCAg -3'
miRNA:   3'- gACC---CUGuag-----CCGUUGUCGCUGCCGU- -5'
24013 5' -57 NC_005262.1 + 37017 0.72 0.336523
Target:  5'- --cGGACAUCGGCGGCGGUucAUGGCu -3'
miRNA:   3'- gacCCUGUAGCCGUUGUCGc-UGCCGu -5'
24013 5' -57 NC_005262.1 + 28207 0.71 0.344592
Target:  5'- gUGGGGCAcCGaCGACAuCGACGGCGa -3'
miRNA:   3'- gACCCUGUaGCcGUUGUcGCUGCCGU- -5'
24013 5' -57 NC_005262.1 + 46322 0.71 0.344592
Target:  5'- aUGGGACGcggaaUCGGCGACGaaagacGCGAUGGaCGc -3'
miRNA:   3'- gACCCUGU-----AGCCGUUGU------CGCUGCC-GU- -5'
24013 5' -57 NC_005262.1 + 15979 0.71 0.351972
Target:  5'- gCUGGcGAUcgacgagAUCGGCGuGCAGCG-CGGCAc -3'
miRNA:   3'- -GACC-CUG-------UAGCCGU-UGUCGCuGCCGU- -5'
24013 5' -57 NC_005262.1 + 28560 0.71 0.352799
Target:  5'- uCUGGGGCuUCcGCcGCGcgcGCGACGGCAu -3'
miRNA:   3'- -GACCCUGuAGcCGuUGU---CGCUGCCGU- -5'
24013 5' -57 NC_005262.1 + 63668 0.69 0.461556
Target:  5'- gCUGGaAUugcCGGCGACGGCGACGacGCAa -3'
miRNA:   3'- -GACCcUGua-GCCGUUGUCGCUGC--CGU- -5'
24013 5' -57 NC_005262.1 + 21668 0.69 0.471406
Target:  5'- --aGGACA-CGcGCAACcugAGCGGCGGCGc -3'
miRNA:   3'- gacCCUGUaGC-CGUUG---UCGCUGCCGU- -5'
24013 5' -57 NC_005262.1 + 33906 0.69 0.481362
Target:  5'- -cGGcGGCccgAUCGGUAGCGGCGgugccgagcucGCGGCGg -3'
miRNA:   3'- gaCC-CUG---UAGCCGUUGUCGC-----------UGCCGU- -5'
24013 5' -57 NC_005262.1 + 5049 0.69 0.481362
Target:  5'- -cGGcGCcugAUCGGCGggcaggcccGCGGCGGCGGCGc -3'
miRNA:   3'- gaCCcUG---UAGCCGU---------UGUCGCUGCCGU- -5'
24013 5' -57 NC_005262.1 + 10854 0.69 0.491419
Target:  5'- -aGGGGg--CGGCAugAGUGAgGGCGc -3'
miRNA:   3'- gaCCCUguaGCCGUugUCGCUgCCGU- -5'
24013 5' -57 NC_005262.1 + 14518 0.69 0.491419
Target:  5'- ---aGGCgAUCGGCAACAGC-AUGGCAg -3'
miRNA:   3'- gaccCUG-UAGCCGUUGUCGcUGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.