miRNA display CGI


Results 1 - 20 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24014 3' -60.7 NC_005262.1 + 51280 0.66 0.501492
Target:  5'- cCUCaccGGCcGCCGGC-UGCUGCGCa -3'
miRNA:   3'- uGAGgcuUCGcCGGCUGcGCGACGCG- -5'
24014 3' -60.7 NC_005262.1 + 4799 0.66 0.501492
Target:  5'- --aUCGGAGcCGGCCGcguaGCGCUgguuucgccgGCGCg -3'
miRNA:   3'- ugaGGCUUC-GCCGGCug--CGCGA----------CGCG- -5'
24014 3' -60.7 NC_005262.1 + 25838 0.66 0.501492
Target:  5'- cGCgggCCGuGAGCGGCUuGCcgGC-CUGCGCg -3'
miRNA:   3'- -UGa--GGC-UUCGCCGGcUG--CGcGACGCG- -5'
24014 3' -60.7 NC_005262.1 + 11544 0.66 0.501492
Target:  5'- ---gCGAGcGCGGUaggcaCGAUGCGCggGCGCg -3'
miRNA:   3'- ugagGCUU-CGCCG-----GCUGCGCGa-CGCG- -5'
24014 3' -60.7 NC_005262.1 + 62819 0.66 0.501492
Target:  5'- cGCUgaCCGccAGCGcGCCGAUcaggGUGCgUGCGCg -3'
miRNA:   3'- -UGA--GGCu-UCGC-CGGCUG----CGCG-ACGCG- -5'
24014 3' -60.7 NC_005262.1 + 46172 0.66 0.501492
Target:  5'- uCUCCGAcGCgacGGCCGAgGCGaucaCGCa -3'
miRNA:   3'- uGAGGCUuCG---CCGGCUgCGCgac-GCG- -5'
24014 3' -60.7 NC_005262.1 + 32749 0.66 0.498527
Target:  5'- cACUCCGuGAGCGacgcggugcugaucGCCGACaaGCUcgacaccggcgGCGCg -3'
miRNA:   3'- -UGAGGC-UUCGC--------------CGGCUGcgCGA-----------CGCG- -5'
24014 3' -60.7 NC_005262.1 + 42159 0.66 0.498527
Target:  5'- gGC-CCGGucGCGGCCGAucgucuguacgugaUGgGCgacgGCGCg -3'
miRNA:   3'- -UGaGGCUu-CGCCGGCU--------------GCgCGa---CGCG- -5'
24014 3' -60.7 NC_005262.1 + 51660 0.66 0.495569
Target:  5'- cCUCCGAaccuaccgacuacaAGCaGCCGGCgaucgacacugugaGCGCguucgUGCGCg -3'
miRNA:   3'- uGAGGCU--------------UCGcCGGCUG--------------CGCG-----ACGCG- -5'
24014 3' -60.7 NC_005262.1 + 16475 0.66 0.495569
Target:  5'- gGCcggCCGggGCGgguucaaaacugguuGCCGaACGCgGCgGCGCc -3'
miRNA:   3'- -UGa--GGCuuCGC---------------CGGC-UGCG-CGaCGCG- -5'
24014 3' -60.7 NC_005262.1 + 10608 0.66 0.491638
Target:  5'- --gCCGuuuCGGCCGccccCGCGCUGCuGCu -3'
miRNA:   3'- ugaGGCuucGCCGGCu---GCGCGACG-CG- -5'
24014 3' -60.7 NC_005262.1 + 61161 0.66 0.491638
Target:  5'- cGCggCGGcgGGCGaGCUGACGgGC-GCGCg -3'
miRNA:   3'- -UGagGCU--UCGC-CGGCUGCgCGaCGCG- -5'
24014 3' -60.7 NC_005262.1 + 57412 0.66 0.491638
Target:  5'- gACcgCCGAgaaGGCGGCCGACaaCGCUcCGg -3'
miRNA:   3'- -UGa-GGCU---UCGCCGGCUGc-GCGAcGCg -5'
24014 3' -60.7 NC_005262.1 + 34988 0.66 0.491638
Target:  5'- aGCUCC-AGGCaGCCGG-GCaGCaGCGCg -3'
miRNA:   3'- -UGAGGcUUCGcCGGCUgCG-CGaCGCG- -5'
24014 3' -60.7 NC_005262.1 + 8006 0.66 0.485769
Target:  5'- cACUCCGGAGgcggcaaaggcccucCGGCUcgcgucaggacuGACGCaGC-GCGCg -3'
miRNA:   3'- -UGAGGCUUC---------------GCCGG------------CUGCG-CGaCGCG- -5'
24014 3' -60.7 NC_005262.1 + 61447 0.66 0.481875
Target:  5'- -gUCgCGAagaaGGCGGCgGACGgCGaaGCGCu -3'
miRNA:   3'- ugAG-GCU----UCGCCGgCUGC-GCgaCGCG- -5'
24014 3' -60.7 NC_005262.1 + 22480 0.66 0.481875
Target:  5'- aGCg-CGAAGCGcugaaGCUGGCGCGCgaGCGg -3'
miRNA:   3'- -UGagGCUUCGC-----CGGCUGCGCGa-CGCg -5'
24014 3' -60.7 NC_005262.1 + 21680 0.66 0.481875
Target:  5'- --aCCuGAGCGGCggCGcCGCGCUGCuGUa -3'
miRNA:   3'- ugaGGcUUCGCCG--GCuGCGCGACG-CG- -5'
24014 3' -60.7 NC_005262.1 + 25721 0.66 0.481875
Target:  5'- -aUCaCGAuGCaGGCCGAgGCGaucGCGCa -3'
miRNA:   3'- ugAG-GCUuCG-CCGGCUgCGCga-CGCG- -5'
24014 3' -60.7 NC_005262.1 + 28559 0.66 0.481875
Target:  5'- -aUCUGggGCuuCCGcCGCGC-GCGCg -3'
miRNA:   3'- ugAGGCuuCGccGGCuGCGCGaCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.