miRNA display CGI


Results 21 - 40 of 189 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24014 3' -60.7 NC_005262.1 + 28559 0.66 0.481875
Target:  5'- -aUCUGggGCuuCCGcCGCGC-GCGCg -3'
miRNA:   3'- ugAGGCuuCGccGGCuGCGCGaCGCG- -5'
24014 3' -60.7 NC_005262.1 + 25040 0.66 0.480903
Target:  5'- gUUCCuGAAGCugGGCgCGcCGCGCggccaugUGCGCa -3'
miRNA:   3'- uGAGG-CUUCG--CCG-GCuGCGCG-------ACGCG- -5'
24014 3' -60.7 NC_005262.1 + 10194 0.66 0.472206
Target:  5'- cCUgCCG-AGCGG-CGACGCGgUUGCGa -3'
miRNA:   3'- uGA-GGCuUCGCCgGCUGCGC-GACGCg -5'
24014 3' -60.7 NC_005262.1 + 57214 0.66 0.472206
Target:  5'- cCUgCCGGucGGCGGCaucgCGACGCGC-GcCGCc -3'
miRNA:   3'- uGA-GGCU--UCGCCG----GCUGCGCGaC-GCG- -5'
24014 3' -60.7 NC_005262.1 + 52721 0.66 0.472206
Target:  5'- uGCUCU---GCGGUCG-CGCGCcacgagccggUGCGCu -3'
miRNA:   3'- -UGAGGcuuCGCCGGCuGCGCG----------ACGCG- -5'
24014 3' -60.7 NC_005262.1 + 51623 0.66 0.472206
Target:  5'- uACg-CGAGcCGGUCGcCGUGUUGCGCa -3'
miRNA:   3'- -UGagGCUUcGCCGGCuGCGCGACGCG- -5'
24014 3' -60.7 NC_005262.1 + 28444 0.66 0.472206
Target:  5'- -gUCgGAGuuGCGGCCcuuGAgGCGCUGCacGCg -3'
miRNA:   3'- ugAGgCUU--CGCCGG---CUgCGCGACG--CG- -5'
24014 3' -60.7 NC_005262.1 + 23428 0.66 0.472206
Target:  5'- cACgCCGGccGUGGUCGAgCGCGUgcucgUGCGCg -3'
miRNA:   3'- -UGaGGCUu-CGCCGGCU-GCGCG-----ACGCG- -5'
24014 3' -60.7 NC_005262.1 + 11140 0.66 0.472206
Target:  5'- gGCUCaggCGAcgcuGCGGCCuguugcuGCGCGCggucuUGCGCg -3'
miRNA:   3'- -UGAG---GCUu---CGCCGGc------UGCGCG-----ACGCG- -5'
24014 3' -60.7 NC_005262.1 + 7621 0.66 0.462636
Target:  5'- --gUCG-AGCGcGCCGACGCGCcGC-Cg -3'
miRNA:   3'- ugaGGCuUCGC-CGGCUGCGCGaCGcG- -5'
24014 3' -60.7 NC_005262.1 + 3076 0.66 0.462636
Target:  5'- cUUCCGAAGCacggaGGCCGAuugcccgaugcCGgGCaGCGUg -3'
miRNA:   3'- uGAGGCUUCG-----CCGGCU-----------GCgCGaCGCG- -5'
24014 3' -60.7 NC_005262.1 + 46831 0.66 0.462636
Target:  5'- cGCUcgCCGAgaaaAGCGcGCCGAgCGUGCUGgacuucuucCGCa -3'
miRNA:   3'- -UGA--GGCU----UCGC-CGGCU-GCGCGAC---------GCG- -5'
24014 3' -60.7 NC_005262.1 + 50025 0.66 0.462636
Target:  5'- --aCCGAAGUGaagcccgaGCCGGCGCcgGCUGCu- -3'
miRNA:   3'- ugaGGCUUCGC--------CGGCUGCG--CGACGcg -5'
24014 3' -60.7 NC_005262.1 + 16991 0.66 0.462636
Target:  5'- uGCUgCCGc--CGGCCGA-GCGC-GCGCu -3'
miRNA:   3'- -UGA-GGCuucGCCGGCUgCGCGaCGCG- -5'
24014 3' -60.7 NC_005262.1 + 9224 0.66 0.459785
Target:  5'- cAUUCCGAc-CGGcCCGGCGCcgguccucauagccGCUGCGg -3'
miRNA:   3'- -UGAGGCUucGCC-GGCUGCG--------------CGACGCg -5'
24014 3' -60.7 NC_005262.1 + 10531 0.66 0.453169
Target:  5'- gGCggCCGAaacGGCuauGCCGACGCGaccggccGCGCg -3'
miRNA:   3'- -UGa-GGCU---UCGc--CGGCUGCGCga-----CGCG- -5'
24014 3' -60.7 NC_005262.1 + 31729 0.66 0.453169
Target:  5'- gUUUCGGccGGCGGUCGcauguCGCGCaaGCGCa -3'
miRNA:   3'- uGAGGCU--UCGCCGGCu----GCGCGa-CGCG- -5'
24014 3' -60.7 NC_005262.1 + 57613 0.66 0.453169
Target:  5'- gAC-CUGAucGCGGUCGAUGCcCgGCGCg -3'
miRNA:   3'- -UGaGGCUu-CGCCGGCUGCGcGaCGCG- -5'
24014 3' -60.7 NC_005262.1 + 12429 0.66 0.453169
Target:  5'- uAUUCCuucaauGCuGCCGccGCGCGCUGCGg -3'
miRNA:   3'- -UGAGGcuu---CGcCGGC--UGCGCGACGCg -5'
24014 3' -60.7 NC_005262.1 + 53441 0.66 0.453169
Target:  5'- gGCgCCGAucagguucgcGCGGUCGGCGagguaGCgGCGCg -3'
miRNA:   3'- -UGaGGCUu---------CGCCGGCUGCg----CGaCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.