miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24014 5' -57 NC_005262.1 + 59809 0.66 0.652915
Target:  5'- -aGGGCAccggccCGCaGGCGGCCacgUAUCAg -3'
miRNA:   3'- cgUCCGUau----GCGaCCGCCGGa--GUAGU- -5'
24014 5' -57 NC_005262.1 + 36230 0.66 0.652915
Target:  5'- aGCuGGUcgaucGCGCUGGCGGUgCUCGccUCGc -3'
miRNA:   3'- -CGuCCGua---UGCGACCGCCG-GAGU--AGU- -5'
24014 5' -57 NC_005262.1 + 43835 0.66 0.64639
Target:  5'- cGCGGGCcggccgcgcgcggcgGUGCGCcGGCaGGaCCUCGgcgCGa -3'
miRNA:   3'- -CGUCCG---------------UAUGCGaCCG-CC-GGAGUa--GU- -5'
24014 5' -57 NC_005262.1 + 10910 0.66 0.642037
Target:  5'- gGCGGacgcGCAUGCGCUGGUcGUgaUCGUCGc -3'
miRNA:   3'- -CGUC----CGUAUGCGACCGcCGg-AGUAGU- -5'
24014 5' -57 NC_005262.1 + 55063 0.66 0.642037
Target:  5'- aCGGGCAUggaggaGCGCcGGCugGGCCUC-UCc -3'
miRNA:   3'- cGUCCGUA------UGCGaCCG--CCGGAGuAGu -5'
24014 5' -57 NC_005262.1 + 10803 0.66 0.63115
Target:  5'- uGCGGgagcgccggccGCGUGCGC--GCGGCCUCgAUCu -3'
miRNA:   3'- -CGUC-----------CGUAUGCGacCGCCGGAG-UAGu -5'
24014 5' -57 NC_005262.1 + 48170 0.66 0.63115
Target:  5'- cGCGcGUcgGCGCcgGGCGG-CUCGUCGc -3'
miRNA:   3'- -CGUcCGuaUGCGa-CCGCCgGAGUAGU- -5'
24014 5' -57 NC_005262.1 + 46640 0.66 0.63115
Target:  5'- cGUGGGCGU-CGCgggagcGGCGGCCggcgCcgCGc -3'
miRNA:   3'- -CGUCCGUAuGCGa-----CCGCCGGa---GuaGU- -5'
24014 5' -57 NC_005262.1 + 29751 0.66 0.63115
Target:  5'- gGCGGGC-UGCGCgggcgcgGGCGGCaugCcgCu -3'
miRNA:   3'- -CGUCCGuAUGCGa------CCGCCGga-GuaGu -5'
24014 5' -57 NC_005262.1 + 11137 0.66 0.620264
Target:  5'- uCAGGCG-ACGCU-GCGGCCUguUg- -3'
miRNA:   3'- cGUCCGUaUGCGAcCGCCGGAguAgu -5'
24014 5' -57 NC_005262.1 + 22326 0.66 0.620264
Target:  5'- cGCAGGCcgGCcgGCgugGGCGGCgcggccgugagCUUGUCGa -3'
miRNA:   3'- -CGUCCGuaUG--CGa--CCGCCG-----------GAGUAGU- -5'
24014 5' -57 NC_005262.1 + 32312 0.67 0.602871
Target:  5'- gGCAGcGCGUGCGCUguucaugggccgucaGGCaGGCgUgAUCGc -3'
miRNA:   3'- -CGUC-CGUAUGCGA---------------CCG-CCGgAgUAGU- -5'
24014 5' -57 NC_005262.1 + 736 0.67 0.598532
Target:  5'- aGCAGGUAUGCGUcGGaaCGGUcgugaacacgcgCUCGUCGc -3'
miRNA:   3'- -CGUCCGUAUGCGaCC--GCCG------------GAGUAGU- -5'
24014 5' -57 NC_005262.1 + 34226 0.67 0.598532
Target:  5'- gGCGGGUagacguagaagAUGCGC-GGUGcGCgCUCGUCGa -3'
miRNA:   3'- -CGUCCG-----------UAUGCGaCCGC-CG-GAGUAGU- -5'
24014 5' -57 NC_005262.1 + 33680 0.67 0.598532
Target:  5'- -gGGGCGacUGC-GGUGGCCUCgAUCGu -3'
miRNA:   3'- cgUCCGUauGCGaCCGCCGGAG-UAGU- -5'
24014 5' -57 NC_005262.1 + 48774 0.67 0.576911
Target:  5'- gGCGcGGCGUccggcuggaacGCGCUGGCcGGCagCUUGUCGa -3'
miRNA:   3'- -CGU-CCGUA-----------UGCGACCG-CCG--GAGUAGU- -5'
24014 5' -57 NC_005262.1 + 50359 0.67 0.566164
Target:  5'- gGCucGGCcgGCGCgGGCGcGCcCUCGUUg -3'
miRNA:   3'- -CGu-CCGuaUGCGaCCGC-CG-GAGUAGu -5'
24014 5' -57 NC_005262.1 + 50168 0.67 0.566164
Target:  5'- cGCGGGUucggucgGCGCa-GCGGCCUuCGUCu -3'
miRNA:   3'- -CGUCCGua-----UGCGacCGCCGGA-GUAGu -5'
24014 5' -57 NC_005262.1 + 27973 0.67 0.555469
Target:  5'- gGCcGGCAUugGCUGGCuGGaaUCG-CAg -3'
miRNA:   3'- -CGuCCGUAugCGACCG-CCggAGUaGU- -5'
24014 5' -57 NC_005262.1 + 43060 0.67 0.555469
Target:  5'- gGCcGGCAccGCGCgccgcGGCaGCUUCAUCAu -3'
miRNA:   3'- -CGuCCGUa-UGCGa----CCGcCGGAGUAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.