miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24014 5' -57 NC_005262.1 + 43835 0.66 0.64639
Target:  5'- cGCGGGCcggccgcgcgcggcgGUGCGCcGGCaGGaCCUCGgcgCGa -3'
miRNA:   3'- -CGUCCG---------------UAUGCGaCCG-CC-GGAGUa--GU- -5'
24014 5' -57 NC_005262.1 + 59398 0.68 0.508178
Target:  5'- aGCAGGCGcgcgacaucgcacgcGCaacgcucgaccugaaGCUGGCcuacGGCCUCAUCAc -3'
miRNA:   3'- -CGUCCGUa--------------UG---------------CGACCG----CCGGAGUAGU- -5'
24014 5' -57 NC_005262.1 + 40770 0.68 0.534264
Target:  5'- --cGGC-UAUGCUGGCGGCacgAUCAa -3'
miRNA:   3'- cguCCGuAUGCGACCGCCGgagUAGU- -5'
24014 5' -57 NC_005262.1 + 27973 0.67 0.555469
Target:  5'- gGCcGGCAUugGCUGGCuGGaaUCG-CAg -3'
miRNA:   3'- -CGuCCGUAugCGACCG-CCggAGUaGU- -5'
24014 5' -57 NC_005262.1 + 58972 0.67 0.555469
Target:  5'- aGCcGGC---CGCcGGCGGCCUCAc-- -3'
miRNA:   3'- -CGuCCGuauGCGaCCGCCGGAGUagu -5'
24014 5' -57 NC_005262.1 + 43060 0.67 0.555469
Target:  5'- gGCcGGCAccGCGCgccgcGGCaGCUUCAUCAu -3'
miRNA:   3'- -CGuCCGUa-UGCGa----CCGcCGGAGUAGU- -5'
24014 5' -57 NC_005262.1 + 736 0.67 0.598532
Target:  5'- aGCAGGUAUGCGUcGGaaCGGUcgugaacacgcgCUCGUCGc -3'
miRNA:   3'- -CGUCCGUAUGCGaCC--GCCG------------GAGUAGU- -5'
24014 5' -57 NC_005262.1 + 32312 0.67 0.602871
Target:  5'- gGCAGcGCGUGCGCUguucaugggccgucaGGCaGGCgUgAUCGc -3'
miRNA:   3'- -CGUC-CGUAUGCGA---------------CCG-CCGgAgUAGU- -5'
24014 5' -57 NC_005262.1 + 55063 0.66 0.642037
Target:  5'- aCGGGCAUggaggaGCGCcGGCugGGCCUC-UCc -3'
miRNA:   3'- cGUCCGUA------UGCGaCCG--CCGGAGuAGu -5'
24014 5' -57 NC_005262.1 + 19435 0.68 0.503024
Target:  5'- cGC-GGCAUcugaaGCGCUGGgcguUGGCCUCGaugcUCAc -3'
miRNA:   3'- -CGuCCGUA-----UGCGACC----GCCGGAGU----AGU- -5'
24014 5' -57 NC_005262.1 + 10961 0.68 0.482645
Target:  5'- aGCAGGCAUucGCGCUgucGGCGcGCCg----- -3'
miRNA:   3'- -CGUCCGUA--UGCGA---CCGC-CGGaguagu -5'
24014 5' -57 NC_005262.1 + 14537 0.69 0.472606
Target:  5'- gGCAGugccguGCAUGCGCUGGauCGGCaggCGUCu -3'
miRNA:   3'- -CGUC------CGUAUGCGACC--GCCGga-GUAGu -5'
24014 5' -57 NC_005262.1 + 12555 0.73 0.269815
Target:  5'- gGCAGGU---CGC-GGCGGCgCUCGUCGa -3'
miRNA:   3'- -CGUCCGuauGCGaCCGCCG-GAGUAGU- -5'
24014 5' -57 NC_005262.1 + 35164 0.72 0.305533
Target:  5'- cCGGGCG-ACGCUGGCGGCaaugagGUCAc -3'
miRNA:   3'- cGUCCGUaUGCGACCGCCGgag---UAGU- -5'
24014 5' -57 NC_005262.1 + 51177 0.71 0.353035
Target:  5'- aGCAGGCAgccgacgACGC-GGCGGCC-CGc-- -3'
miRNA:   3'- -CGUCCGUa------UGCGaCCGCCGGaGUagu -5'
24014 5' -57 NC_005262.1 + 30412 0.7 0.387491
Target:  5'- aGCc-GCGUGCGCUGGaCGGCgCUCGaCAc -3'
miRNA:   3'- -CGucCGUAUGCGACC-GCCG-GAGUaGU- -5'
24014 5' -57 NC_005262.1 + 49206 0.7 0.387491
Target:  5'- --cGGCAUGCugGCcgagGGCGGCCUCggCGg -3'
miRNA:   3'- cguCCGUAUG--CGa---CCGCCGGAGuaGU- -5'
24014 5' -57 NC_005262.1 + 28165 0.7 0.40553
Target:  5'- cGCGGcGCAacUGCGCgcGGCGGCCgUCGaCAa -3'
miRNA:   3'- -CGUC-CGU--AUGCGa-CCGCCGG-AGUaGU- -5'
24014 5' -57 NC_005262.1 + 58455 0.7 0.424087
Target:  5'- gGCAGGCGUGCGC-GGCGucaCgaCGUCGg -3'
miRNA:   3'- -CGUCCGUAUGCGaCCGCc--GgaGUAGU- -5'
24014 5' -57 NC_005262.1 + 48360 0.69 0.462673
Target:  5'- --cGGCGc-UGCUGGCGGCCggcUAUCAg -3'
miRNA:   3'- cguCCGUauGCGACCGCCGGa--GUAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.