miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24015 5' -50.7 NC_005262.1 + 24300 0.66 0.942221
Target:  5'- -cGGCGugccGGcgCAGCGUcGCGGcUGCCg -3'
miRNA:   3'- ucUCGUua--CCuaGUUGCA-CGUC-ACGG- -5'
24015 5' -50.7 NC_005262.1 + 8979 0.66 0.942221
Target:  5'- aAGAGC---GGAcCGuCGUGCGGUGUg -3'
miRNA:   3'- -UCUCGuuaCCUaGUuGCACGUCACGg -5'
24015 5' -50.7 NC_005262.1 + 49149 0.66 0.942221
Target:  5'- -cGGCAc--GGUgGGCGUGCAG-GCCg -3'
miRNA:   3'- ucUCGUuacCUAgUUGCACGUCaCGG- -5'
24015 5' -50.7 NC_005262.1 + 14518 0.66 0.931483
Target:  5'- -aGGCGAUcGGcaaCAGCaugGCAGUGCCg -3'
miRNA:   3'- ucUCGUUA-CCua-GUUGca-CGUCACGG- -5'
24015 5' -50.7 NC_005262.1 + 35981 0.66 0.925674
Target:  5'- -uGGCAccgcgGGAUCGugcguuccACGUGCcgcgcgAGUGCCg -3'
miRNA:   3'- ucUCGUua---CCUAGU--------UGCACG------UCACGG- -5'
24015 5' -50.7 NC_005262.1 + 27164 0.66 0.919573
Target:  5'- -cGGCAcaccGGccgCAugGUGUGGUGCCg -3'
miRNA:   3'- ucUCGUua--CCua-GUugCACGUCACGG- -5'
24015 5' -50.7 NC_005262.1 + 33438 0.67 0.906492
Target:  5'- cGGGUuGUcGAUCGGCGgcaCGGUGCCg -3'
miRNA:   3'- uCUCGuUAcCUAGUUGCac-GUCACGG- -5'
24015 5' -50.7 NC_005262.1 + 50422 0.67 0.905808
Target:  5'- cGGAGCGcgaGGG-CcGCGUGCAcgucgucGUGCCg -3'
miRNA:   3'- -UCUCGUua-CCUaGuUGCACGU-------CACGG- -5'
24015 5' -50.7 NC_005262.1 + 52186 0.67 0.899519
Target:  5'- gAGGGCAu--GAcCAGCGUGCAGgaGUCg -3'
miRNA:   3'- -UCUCGUuacCUaGUUGCACGUCa-CGG- -5'
24015 5' -50.7 NC_005262.1 + 5769 0.67 0.899519
Target:  5'- cGAGgAAUGGGUgccgAugGUGCAGUaCCu -3'
miRNA:   3'- uCUCgUUACCUAg---UugCACGUCAcGG- -5'
24015 5' -50.7 NC_005262.1 + 62304 0.68 0.879281
Target:  5'- gAGGGCAAUcccgagagaaagaucGGcAUCAACGUGCcGUuuccugaGCCg -3'
miRNA:   3'- -UCUCGUUA---------------CC-UAGUUGCACGuCA-------CGG- -5'
24015 5' -50.7 NC_005262.1 + 60641 0.68 0.860485
Target:  5'- cGAGCGccGGcGUCAGCGUGCccuUGCg -3'
miRNA:   3'- uCUCGUuaCC-UAGUUGCACGuc-ACGg -5'
24015 5' -50.7 NC_005262.1 + 15981 0.68 0.85189
Target:  5'- -uGGCGAUcgacGaGAUCGGCGUGCAGcGCg -3'
miRNA:   3'- ucUCGUUA----C-CUAGUUGCACGUCaCGg -5'
24015 5' -50.7 NC_005262.1 + 906 0.68 0.85189
Target:  5'- -aAGCAAUGaaGGUCAcgaucgacgacaACGUGaCAGUGCUg -3'
miRNA:   3'- ucUCGUUAC--CUAGU------------UGCAC-GUCACGG- -5'
24015 5' -50.7 NC_005262.1 + 15427 0.69 0.81516
Target:  5'- uGGGCGGggGGAUCAACccGCAGU-CCu -3'
miRNA:   3'- uCUCGUUa-CCUAGUUGcaCGUCAcGG- -5'
24015 5' -50.7 NC_005262.1 + 56462 0.69 0.805441
Target:  5'- -cGGCAaggacAUGGAaaccggcgUCAACGUGCAGaagcGCCu -3'
miRNA:   3'- ucUCGU-----UACCU--------AGUUGCACGUCa---CGG- -5'
24015 5' -50.7 NC_005262.1 + 45038 0.7 0.785436
Target:  5'- cGAGCAuggGGAUCAACccgGCgAGcgGCCg -3'
miRNA:   3'- uCUCGUua-CCUAGUUGca-CG-UCa-CGG- -5'
24015 5' -50.7 NC_005262.1 + 46802 0.7 0.775173
Target:  5'- cGAGcCGAUGac-CGACGUGCAG-GCCc -3'
miRNA:   3'- uCUC-GUUACcuaGUUGCACGUCaCGG- -5'
24015 5' -50.7 NC_005262.1 + 40988 0.72 0.653538
Target:  5'- gAGGGCGuaguacgGUGG-UCGGuucucgUGUGCGGUGCCg -3'
miRNA:   3'- -UCUCGU-------UACCuAGUU------GCACGUCACGG- -5'
24015 5' -50.7 NC_005262.1 + 25368 0.73 0.598033
Target:  5'- cGGGCcuucaGGAUCAGguUGCGGUGCCa -3'
miRNA:   3'- uCUCGuua--CCUAGUUgcACGUCACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.