miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24016 3' -59.3 NC_005262.1 + 1486 0.77 0.105966
Target:  5'- -uGCCGGcgCUGCCGCUgcAUCUGCGGa -3'
miRNA:   3'- cuCGGCCuaGACGGCGGa-UAGGCGCU- -5'
24016 3' -59.3 NC_005262.1 + 3723 0.68 0.386824
Target:  5'- uGAGCUGGGcCUG-CGCCUGgauggguUCCGCGc -3'
miRNA:   3'- -CUCGGCCUaGACgGCGGAU-------AGGCGCu -5'
24016 3' -59.3 NC_005262.1 + 4684 0.66 0.504621
Target:  5'- cGGCCGGAUCggGCCGCggcAUCCagucguugcgcaaguGCGGg -3'
miRNA:   3'- cUCGGCCUAGa-CGGCGga-UAGG---------------CGCU- -5'
24016 3' -59.3 NC_005262.1 + 5163 0.75 0.142753
Target:  5'- cGAGCCGG-UCgcacgcGCCGCCg--CCGCGGg -3'
miRNA:   3'- -CUCGGCCuAGa-----CGGCGGauaGGCGCU- -5'
24016 3' -59.3 NC_005262.1 + 5223 0.68 0.423489
Target:  5'- cGAGCaGGAUCagcGCCGCCcGUCgCGCa- -3'
miRNA:   3'- -CUCGgCCUAGa--CGGCGGaUAG-GCGcu -5'
24016 3' -59.3 NC_005262.1 + 6657 0.7 0.322325
Target:  5'- gGAGCCuGAUCgcGCCGCUcGUCgGCGGc -3'
miRNA:   3'- -CUCGGcCUAGa-CGGCGGaUAGgCGCU- -5'
24016 3' -59.3 NC_005262.1 + 8100 0.73 0.211656
Target:  5'- cGAGCCGGAgggccUUUGCCGCC--UCCG-GAg -3'
miRNA:   3'- -CUCGGCCU-----AGACGGCGGauAGGCgCU- -5'
24016 3' -59.3 NC_005262.1 + 10472 0.67 0.461194
Target:  5'- uGGCCGGAUUgaucCUGCCacuUCCGCGu -3'
miRNA:   3'- cUCGGCCUAGac--GGCGGau-AGGCGCu -5'
24016 3' -59.3 NC_005262.1 + 12150 0.67 0.442114
Target:  5'- aGAGCCaGGUUUcgaaccugaagGCCGCgCUGUCUGCGc -3'
miRNA:   3'- -CUCGGcCUAGA-----------CGGCG-GAUAGGCGCu -5'
24016 3' -59.3 NC_005262.1 + 12577 0.67 0.490601
Target:  5'- cGAGCUGcugCUGCCGCCggcgaggcgUCGCGGa -3'
miRNA:   3'- -CUCGGCcuaGACGGCGGaua------GGCGCU- -5'
24016 3' -59.3 NC_005262.1 + 14553 0.69 0.37906
Target:  5'- -cGCUGGAUCgGCaggCGUCUcgCCGCGGc -3'
miRNA:   3'- cuCGGCCUAGaCG---GCGGAuaGGCGCU- -5'
24016 3' -59.3 NC_005262.1 + 17166 0.66 0.551802
Target:  5'- -cGCCGcGUCgacggGCgCGCCUAUCgGCGc -3'
miRNA:   3'- cuCGGCcUAGa----CG-GCGGAUAGgCGCu -5'
24016 3' -59.3 NC_005262.1 + 17637 0.74 0.176494
Target:  5'- -cGCCGcGG-CUGCCGCCUcgCgCGCGAc -3'
miRNA:   3'- cuCGGC-CUaGACGGCGGAuaG-GCGCU- -5'
24016 3' -59.3 NC_005262.1 + 22597 0.69 0.337866
Target:  5'- uAGCgGGA-CUGCCGCUUcgcgAUCCGCu- -3'
miRNA:   3'- cUCGgCCUaGACGGCGGA----UAGGCGcu -5'
24016 3' -59.3 NC_005262.1 + 25123 0.66 0.500597
Target:  5'- uGAGCUGGcgC-GCUGCUUGUCCGa-- -3'
miRNA:   3'- -CUCGGCCuaGaCGGCGGAUAGGCgcu -5'
24016 3' -59.3 NC_005262.1 + 26933 0.85 0.026739
Target:  5'- cGAGCCGGAUUcG-CGCCUAUCCGCGAc -3'
miRNA:   3'- -CUCGGCCUAGaCgGCGGAUAGGCGCU- -5'
24016 3' -59.3 NC_005262.1 + 28281 0.8 0.060838
Target:  5'- cGGCCGGcgCUGUCGCCUAUgCGCGc -3'
miRNA:   3'- cUCGGCCuaGACGGCGGAUAgGCGCu -5'
24016 3' -59.3 NC_005262.1 + 32724 0.67 0.451599
Target:  5'- cGAGCuCGGcgugCUGCCgGCCgaccacUCCGUGAg -3'
miRNA:   3'- -CUCG-GCCua--GACGG-CGGau----AGGCGCU- -5'
24016 3' -59.3 NC_005262.1 + 32872 0.69 0.370556
Target:  5'- uGGCCGGcgC-GCCGCCggugucgagcuUGUCgGCGAu -3'
miRNA:   3'- cUCGGCCuaGaCGGCGG-----------AUAGgCGCU- -5'
24016 3' -59.3 NC_005262.1 + 35906 0.66 0.524941
Target:  5'- gGGGCCGGcacaguGUCgauggccucgacuuUGCCuaccgugugaacgcGCCUAUCCGCGu -3'
miRNA:   3'- -CUCGGCC------UAG--------------ACGG--------------CGGAUAGGCGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.