Results 21 - 35 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24016 | 3' | -59.3 | NC_005262.1 | + | 43426 | 0.69 | 0.362184 |
Target: 5'- -cGCCGcGUCgaucGCCGCCUGUUCaGCGGc -3' miRNA: 3'- cuCGGCcUAGa---CGGCGGAUAGG-CGCU- -5' |
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24016 | 3' | -59.3 | NC_005262.1 | + | 57508 | 0.69 | 0.362184 |
Target: 5'- -uGCCGGAgcguugUCgGCCGCCUucUCgGCGGu -3' miRNA: 3'- cuCGGCCU------AGaCGGCGGAu-AGgCGCU- -5' |
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24016 | 3' | -59.3 | NC_005262.1 | + | 54519 | 0.69 | 0.362184 |
Target: 5'- cGGUCGGcgCgcgcgGCgGCCUGcgccUCCGCGAg -3' miRNA: 3'- cUCGGCCuaGa----CGgCGGAU----AGGCGCU- -5' |
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24016 | 3' | -59.3 | NC_005262.1 | + | 60233 | 0.69 | 0.345838 |
Target: 5'- cGGCCGGGUaCUucGCCcauGCCUucgCCGCGAc -3' miRNA: 3'- cUCGGCCUA-GA--CGG---CGGAua-GGCGCU- -5' |
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24016 | 3' | -59.3 | NC_005262.1 | + | 22597 | 0.69 | 0.337866 |
Target: 5'- uAGCgGGA-CUGCCGCUUcgcgAUCCGCu- -3' miRNA: 3'- cUCGgCCUaGACGGCGGA----UAGGCGcu -5' |
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24016 | 3' | -59.3 | NC_005262.1 | + | 46692 | 0.7 | 0.330028 |
Target: 5'- cGGGCgGGAUCUGUgGC--GUCUGCGGc -3' miRNA: 3'- -CUCGgCCUAGACGgCGgaUAGGCGCU- -5' |
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24016 | 3' | -59.3 | NC_005262.1 | + | 6657 | 0.7 | 0.322325 |
Target: 5'- gGAGCCuGAUCgcGCCGCUcGUCgGCGGc -3' miRNA: 3'- -CUCGGcCUAGa-CGGCGGaUAGgCGCU- -5' |
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24016 | 3' | -59.3 | NC_005262.1 | + | 43539 | 0.71 | 0.259048 |
Target: 5'- --aCCGGAUgUGCCGCCUgccGUCCG-GAu -3' miRNA: 3'- cucGGCCUAgACGGCGGA---UAGGCgCU- -5' |
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24016 | 3' | -59.3 | NC_005262.1 | + | 8100 | 0.73 | 0.211656 |
Target: 5'- cGAGCCGGAgggccUUUGCCGCC--UCCG-GAg -3' miRNA: 3'- -CUCGGCCU-----AGACGGCGGauAGGCgCU- -5' |
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24016 | 3' | -59.3 | NC_005262.1 | + | 17637 | 0.74 | 0.176494 |
Target: 5'- -cGCCGcGG-CUGCCGCCUcgCgCGCGAc -3' miRNA: 3'- cuCGGC-CUaGACGGCGGAuaG-GCGCU- -5' |
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24016 | 3' | -59.3 | NC_005262.1 | + | 54718 | 0.74 | 0.176031 |
Target: 5'- cGAGCCGGA-CUGCUcggcggaccacgaGCCgagCCGCGAg -3' miRNA: 3'- -CUCGGCCUaGACGG-------------CGGauaGGCGCU- -5' |
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24016 | 3' | -59.3 | NC_005262.1 | + | 5163 | 0.75 | 0.142753 |
Target: 5'- cGAGCCGG-UCgcacgcGCCGCCg--CCGCGGg -3' miRNA: 3'- -CUCGGCCuAGa-----CGGCGGauaGGCGCU- -5' |
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24016 | 3' | -59.3 | NC_005262.1 | + | 1486 | 0.77 | 0.105966 |
Target: 5'- -uGCCGGcgCUGCCGCUgcAUCUGCGGa -3' miRNA: 3'- cuCGGCCuaGACGGCGGa-UAGGCGCU- -5' |
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24016 | 3' | -59.3 | NC_005262.1 | + | 28281 | 0.8 | 0.060838 |
Target: 5'- cGGCCGGcgCUGUCGCCUAUgCGCGc -3' miRNA: 3'- cUCGGCCuaGACGGCGGAUAgGCGCu -5' |
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24016 | 3' | -59.3 | NC_005262.1 | + | 26933 | 0.85 | 0.026739 |
Target: 5'- cGAGCCGGAUUcG-CGCCUAUCCGCGAc -3' miRNA: 3'- -CUCGGCCUAGaCgGCGGAUAGGCGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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