miRNA display CGI


Results 1 - 20 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24017 5' -62.8 NC_005262.1 + 24885 0.66 0.428219
Target:  5'- cGCCgGCGCGUGacaGGCGAGcucGGCcAGCc -3'
miRNA:   3'- -CGGgCGCGCGUgg-CUGCUC---CCGcUCG- -5'
24017 5' -62.8 NC_005262.1 + 2917 0.66 0.428219
Target:  5'- cGCCaGCGCGCAaaCGAgguCGAGGcGCaggugGAGCg -3'
miRNA:   3'- -CGGgCGCGCGUg-GCU---GCUCC-CG-----CUCG- -5'
24017 5' -62.8 NC_005262.1 + 11415 0.66 0.428219
Target:  5'- cGCgCCGCGcCGgGCCGcCGAaGGUGcGCg -3'
miRNA:   3'- -CG-GGCGC-GCgUGGCuGCUcCCGCuCG- -5'
24017 5' -62.8 NC_005262.1 + 10710 0.66 0.428219
Target:  5'- aGgCCGCGCGCACgCGGCc--GGCGcucccGCa -3'
miRNA:   3'- -CgGGCGCGCGUG-GCUGcucCCGCu----CG- -5'
24017 5' -62.8 NC_005262.1 + 4570 0.66 0.428219
Target:  5'- uCUCGCGCcaGCGgCGGCGcugcucGGGcGUGAGCg -3'
miRNA:   3'- cGGGCGCG--CGUgGCUGC------UCC-CGCUCG- -5'
24017 5' -62.8 NC_005262.1 + 23497 0.66 0.428219
Target:  5'- cGCCCGCuGaCGC-CCGAgGAGcuGCGccAGCa -3'
miRNA:   3'- -CGGGCG-C-GCGuGGCUgCUCc-CGC--UCG- -5'
24017 5' -62.8 NC_005262.1 + 57335 0.66 0.41936
Target:  5'- cGUCUGgGCGCGCCGuuccCGGaacaGGCuGAGCu -3'
miRNA:   3'- -CGGGCgCGCGUGGCu---GCUc---CCG-CUCG- -5'
24017 5' -62.8 NC_005262.1 + 13147 0.66 0.41936
Target:  5'- cGCCgCGCGCGCugCG-CGGcacaacuccuuGGCGGGa -3'
miRNA:   3'- -CGG-GCGCGCGugGCuGCUc----------CCGCUCg -5'
24017 5' -62.8 NC_005262.1 + 2654 0.66 0.41936
Target:  5'- uGCCUGCGCgGCGCC-----GGGCG-GCg -3'
miRNA:   3'- -CGGGCGCG-CGUGGcugcuCCCGCuCG- -5'
24017 5' -62.8 NC_005262.1 + 25624 0.66 0.41936
Target:  5'- -gCCGcCGCGCACgGACGuc-GCGAcGCg -3'
miRNA:   3'- cgGGC-GCGCGUGgCUGCuccCGCU-CG- -5'
24017 5' -62.8 NC_005262.1 + 53430 0.66 0.41936
Target:  5'- gGUUCGCGCGguC-GGCGAGGuaGCGGcGCg -3'
miRNA:   3'- -CGGGCGCGCguGgCUGCUCC--CGCU-CG- -5'
24017 5' -62.8 NC_005262.1 + 9609 0.66 0.41936
Target:  5'- aGCCCGcCGCGCAUauUGAaaAGcGGuCGGGCc -3'
miRNA:   3'- -CGGGC-GCGCGUG--GCUgcUC-CC-GCUCG- -5'
24017 5' -62.8 NC_005262.1 + 55105 0.66 0.41936
Target:  5'- uGCCCGCGCcgACCG-CGuGcGCGAGg -3'
miRNA:   3'- -CGGGCGCGcgUGGCuGCuCcCGCUCg -5'
24017 5' -62.8 NC_005262.1 + 27651 0.66 0.410612
Target:  5'- uCUCGCGCuGCG-CGGCGuccucgccGGGGCuGAGCu -3'
miRNA:   3'- cGGGCGCG-CGUgGCUGC--------UCCCG-CUCG- -5'
24017 5' -62.8 NC_005262.1 + 5207 0.66 0.410612
Target:  5'- cGCCCGuCGCGCAUggcaggcaucgUGAaccGGGCGcGCa -3'
miRNA:   3'- -CGGGC-GCGCGUG-----------GCUgcuCCCGCuCG- -5'
24017 5' -62.8 NC_005262.1 + 52893 0.66 0.410612
Target:  5'- -gUCGCGCacuaCACCaGCGAGGGCGuGa -3'
miRNA:   3'- cgGGCGCGc---GUGGcUGCUCCCGCuCg -5'
24017 5' -62.8 NC_005262.1 + 62794 0.66 0.410612
Target:  5'- cGCgCCGaaaGCGgAaaucCCGACGaAGGGCGAcGUg -3'
miRNA:   3'- -CG-GGCg--CGCgU----GGCUGC-UCCCGCU-CG- -5'
24017 5' -62.8 NC_005262.1 + 57764 0.66 0.410612
Target:  5'- -aUUGCGCGCAauGGCGugcugguuGGCGAGCa -3'
miRNA:   3'- cgGGCGCGCGUggCUGCuc------CCGCUCG- -5'
24017 5' -62.8 NC_005262.1 + 52047 0.66 0.410612
Target:  5'- cGCCgGCGCcuaCAUCGAgucCGGGGuGCGGGa -3'
miRNA:   3'- -CGGgCGCGc--GUGGCU---GCUCC-CGCUCg -5'
24017 5' -62.8 NC_005262.1 + 3497 0.66 0.410612
Target:  5'- cGCCCGaCGCGgAUCGGCuuacGGUGGGUu -3'
miRNA:   3'- -CGGGC-GCGCgUGGCUGcuc-CCGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.